Os01g0866600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BolA-like protein family protein.
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Os01g0866600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BolA-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.79 | 0.296 | 13.2 | -1.24 | 0.458 | 0.932 | 0.273 | -1.65 | -0.444 | 9.69 | 10.08 | 731 | -- | -- |
| 41.59 | 0.3 | 13.1 | -0.961 | 0.459 | 0.911 | 0.592 | -- | -0.364 | 9.63 | 9.65 | 726 | -- | -- |
| 40.02 | 0.295 | 13.2 | -1.28 | 0.452 | 0.917 | -- | -1.88 | -0.452 | 9.82 | 10.68 | 757 | -- | -- |
| 41.06 | 0.298 | 13.1 | -1.11 | 0.279 | 0.852 | -- | -- | -0.41 | 10.9 | 11.36 | 5685 | -- | -- |
| 45.94 | 0.317 | 13.1 | -0.962 | -- | 0.884 | -- | -0.685 | -0.368 | -- | 10.68 | 757 | -- | -- |
| 52.26 | 0.339 | 13.1 | -0.724 | 0.265 | -- | 0.48 | -- | -0.225 | 10.3 | -- | -- | -- | -- |
| 53.18 | 0.342 | 13.1 | -0.704 | 0.262 | -- | -- | -- | -0.224 | 10.5 | -- | -- | -- | -- |
| 45.67 | 0.315 | 13.1 | -1.11 | -- | 0.836 | -- | -- | -0.409 | -- | 9.985 | 5868 | -- | -- |
| 62.5 | 0.37 | 13.1 | -- | 0.217 | 0.594 | -- | -- | -0.216 | 8.08 | 9.687 | 4475 | -- | -- |
| 57.38 | 0.354 | 13.1 | -0.709 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 66.25 | 0.381 | 13.1 | -- | 0.266 | -- | -- | -- | -0.145 | 10.7 | -- | -- | -- | -- |
| 65.09 | 0.377 | 13.1 | -- | -- | 0.602 | -- | -- | -0.214 | -- | 9.687 | 4475 | -- | -- |
| 70.63 | 0.392 | 13.1 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 10 | 37.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 136 | 38.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 152 | 38.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 256 | 39.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 296 | 39.27 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 371 | 39.36 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 440 | 39.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 535 | 39.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 540 | 39.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 571 | 39.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 649 | 39.63 | temperature | 10 | 4320 | > th | dose dependent | sin | 2 | NA |
| 707 | 39.67 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 783 | 39.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 786 | 39.73 | temperature | 30 | 4320 | < th | dose dependent | sin | 2 | NA |
| 809 | 39.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 812 | 39.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 837 | 39.77 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 860 | 39.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 863 | 39.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 900 | 39.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 919 | 39.80 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 960 | 39.82 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 988 | 39.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 11 |