BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0866600 Os01g0866600|J065047D24
         (94 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09830.1  | chr5:3057816-3058769 REVERSE LENGTH=94              90   3e-19

>AT5G09830.1 | chr5:3057816-3058769 REVERSE LENGTH=94
          Length = 93

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 52/74 (70%)

Query: 3  VTKEDVEAAIXXXXXXXXXXXXXXXGGCGASYEIEVVSEKFEGKRLLERHRMVNTALAPH 62
          VTKE VEA++               GGCG+S+E+EVVSE+FEGKRLLERHRMVN AL   
Sbjct: 2  VTKEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALEEE 61

Query: 63 MAEIHAVSIKKALT 76
          M EIHA+SIKKA T
Sbjct: 62 MKEIHALSIKKAQT 75



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,077,458
Number of extensions: 25200
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)