Os01g0860400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acidic endochitinase precursor (EC 3.2.1.14).
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Os01g0860400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acidic endochitinase precursor (EC 3.2.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 482.67 | 1.03 | 8.75 | 1.39 | 0.0819 | -1.63 | 1.26 | -10 | -0.0575 | 7.52 | 1006 | 87 | 9.1 | 4.3 |
| 497.9 | 1.04 | 8.72 | 1.55 | 0.256 | -2.82 | 0.886 | -- | -0.0503 | 3.97 | 1003 | 65 | 9.21 | 4.52 |
| 484.57 | 1.03 | 8.75 | 1.39 | 0.227 | -1.45 | -- | -9.63 | -0.057 | 3.07 | 1005 | 84 | 9.12 | 4.33 |
| 498.37 | 1.04 | 8.74 | 1.49 | 0.241 | -3.31 | -- | -- | -0.0727 | 2.9 | 1002 | 55 | 9.48 | 4.17 |
| 487.15 | 1.03 | 8.75 | 1.41 | -- | -1.66 | -- | -9.86 | -0.0559 | -- | 1005 | 74 | 9.3 | 4.22 |
| 543.95 | 1.09 | 8.72 | 1.39 | 0.41 | -- | 0.744 | -- | -0.0107 | 2.25 | -- | -- | -- | -- |
| 545.8 | 1.09 | 8.72 | 1.37 | 0.411 | -- | -- | -- | -0.0143 | 1.68 | -- | -- | -- | -- |
| 501.77 | 1.04 | 8.74 | 1.49 | -- | -3.45 | -- | -- | -0.0743 | -- | 1002 | 59 | 9.43 | 4.17 |
| 555.23 | 1.1 | 8.76 | -- | 0.289 | -3.16 | -- | -- | -0.201 | 2.7 | 1002 | 43 | 9.62 | 4.07 |
| 556.07 | 1.1 | 8.72 | 1.39 | -- | -- | -- | -- | -0.00512 | -- | -- | -- | -- | -- |
| 595.5 | 1.14 | 8.76 | -- | 0.436 | -- | -- | -- | -0.167 | 1.78 | -- | -- | -- | -- |
| 559.75 | 1.1 | 8.77 | -- | -- | -3.28 | -- | -- | -0.214 | -- | 1002 | 47 | 9.58 | 4.07 |
| 607.03 | 1.15 | 8.75 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 484.69 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 2 | 485.64 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 4 | 485.71 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 9 | 4 |
| 7 | 487.00 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 8 | 487.05 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 9 | 487.05 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 10 | 487.32 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 20 |
| 19 | 488.25 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 29 | 488.89 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 30 | 489.48 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 36 | 489.70 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 40 | 490.06 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 17 |
| 42 | 490.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 45 | 490.24 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 46 | 490.35 | wind | 7 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 54 | 490.65 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 20 |
| 57 | 490.77 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 64 | 491.13 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 70 | 491.43 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 81 | 491.83 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 5 |
| 87 | 491.88 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 92 | 492.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 109 | 492.56 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 112 | 492.66 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 5 |
| 116 | 492.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 136 | 493.23 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 138 | 493.24 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 146 | 493.31 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 152 | 493.48 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 161 | 493.63 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 163 | 493.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 169 | 493.79 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 173 | 493.87 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 187 | 494.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 193 | 494.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 198 | 494.27 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 217 | 494.48 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 11 | 2 |
| 223 | 494.63 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 229 | 494.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 248 | 495.03 | wind | 7 | 14400 | > th | dose dependent | sin | 5 | NA |
| 258 | 495.11 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 269 | 495.25 | wind | 9 | 14400 | > th | dose independent | sin | 7 | NA |
| 273 | 495.31 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 275 | 495.33 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 289 | 495.51 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 324 | 495.93 | wind | 9 | 14400 | > th | dose dependent | sin | 7 | NA |
| 331 | 495.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 343 | 496.11 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 380 | 496.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 402 | 496.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 10 |
| 447 | 496.96 | radiation | 20 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 479 | 497.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 532 | 497.35 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 538 | 497.39 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 19 |
| 559 | 497.47 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 9 | 1 |
| 580 | 497.60 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 597 | 497.66 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 605 | 497.67 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 615 | 497.69 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 639 | 497.84 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 653 | 497.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 696 | 498.16 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 702 | 498.17 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 728 | 498.23 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 833 | 498.35 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 959 | 498.72 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 970 | 498.77 | radiation | 40 | 43200 | > th | dose independent | sin | 9 | NA |
| 998 | 498.87 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |