BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0860400 Os01g0860400|AK111415
         (297 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            329   1e-90

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  329 bits (843), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 155/274 (56%), Positives = 201/274 (73%), Gaps = 3/274 (1%)

Query: 26  GGIAVYWGQNDGEASLAETCASGNYEFVIIAFLPKFGKGQTPRVDLASHCDPASGGCTGQ 85
           GGIA+YWGQN  E +L+ TCA+G Y +V +AFL KFG GQTP ++LA HC+PA+  CT  
Sbjct: 30  GGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHF 89

Query: 86  SKDIRACQRRGVKVLLSIGGGDGSYGLSSPGDARQVAMYLWNNFLGGSSSSRPLGDAVLD 145
              ++ CQ RG+KV+LS+GGG G+Y + S  DA+ +A YLWNNFLGG SSSRPLGDAVLD
Sbjct: 90  GSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLD 149

Query: 146 GIDFDIELGGAKFWDDLARDLKSLGRSGGRRVVLSAAPQCPFPDEWDGGAISTGLFDAVW 205
           GIDF+IELG  + WDDLAR L       GR++ L+ APQCPFPD   G A++T  FD VW
Sbjct: 150 GIDFNIELGSPQHWDDLARTLSKFSHR-GRKIYLTGAPQCPFPDRLMGSALNTKRFDYVW 208

Query: 206 VQFYNNPECQFSAGRGA-FMDAWRKW-ESVPAGRLFLGLPASKDAAGTGFVPAGELNSRV 263
           +QFYNNP C +S+G      D+W KW  S+ A + FLGLPA+ +AAG+G++P   L S++
Sbjct: 209 IQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTSQI 268

Query: 264 LPLIRGSPKYGGVMLWSKYYDDQTGYSSAIKSHV 297
           LP ++ S KYGGVMLWSK++DD+ GYSS+I + V
Sbjct: 269 LPTLKKSRKYGGVMLWSKFWDDKNGYSSSILASV 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,240,780
Number of extensions: 334258
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)