Os01g0856800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os01g0856800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.89 | 0.199 | 12.5 | 0.304 | 0.5 | 0.8 | 0.308 | 1.61 | 0.00194 | 18.9 | 31.27 | 237 | -- | -- |
| 20.35 | 0.21 | 12.4 | 0.56 | 0.482 | 0.871 | 0.057 | -- | 0.0541 | 18.8 | 42.67 | 199 | -- | -- |
| 18.1 | 0.198 | 12.5 | 0.32 | 0.49 | 0.79 | -- | 1.48 | 0.00615 | 18.8 | 31.27 | 214 | -- | -- |
| 20.36 | 0.21 | 12.4 | 0.559 | 0.482 | 0.87 | -- | -- | 0.0544 | 18.8 | 39.44 | 199 | -- | -- |
| 25.42 | 0.235 | 12.5 | 0.297 | -- | 0.656 | -- | 1.31 | -0.024 | -- | 40.35 | 1522 | -- | -- |
| 27.97 | 0.248 | 12.5 | 0.381 | 0.335 | -- | 0.195 | -- | -0.0678 | 20.9 | -- | -- | -- | -- |
| 28.09 | 0.248 | 12.5 | 0.375 | 0.336 | -- | -- | -- | -0.0675 | 20.8 | -- | -- | -- | -- |
| 26.89 | 0.242 | 12.4 | 0.588 | -- | 0.665 | -- | -- | 0.0535 | -- | 40.12 | 1511 | -- | -- |
| 27.73 | 0.245 | 12.5 | -- | 0.403 | 0.609 | -- | -- | -0.0385 | 19.2 | 59.47 | 132 | -- | -- |
| 34.48 | 0.274 | 12.5 | 0.374 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 31.79 | 0.264 | 12.5 | -- | 0.335 | -- | -- | -- | -0.109 | 20.8 | -- | -- | -- | -- |
| 34.19 | 0.272 | 12.5 | -- | -- | 0.511 | -- | -- | -0.0536 | -- | 64.23 | 2 | -- | -- |
| 38.17 | 0.288 | 12.5 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 3 | 16.38 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 6 | 16.51 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 16.71 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 17 | 16.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 44 | 17.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 138 | 17.60 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 176 | 17.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 185 | 17.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 187 | 17.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 190 | 17.81 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 194 | 17.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 195 | 17.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 199 | 17.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 201 | 17.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 208 | 17.86 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 221 | 17.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 228 | 17.88 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 269 | 17.93 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 281 | 17.94 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 282 | 17.94 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 297 | 17.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 316 | 17.99 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 327 | 18.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 333 | 18.01 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 337 | 18.01 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 354 | 18.03 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 355 | 18.03 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 357 | 18.03 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 405 | 18.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 443 | 18.10 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 452 | 18.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 458 | 18.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 537 | 18.15 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 538 | 18.16 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 565 | 18.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 585 | 18.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 626 | 18.21 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 670 | 18.24 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 685 | 18.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 688 | 18.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 726 | 18.27 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 746 | 18.28 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 788 | 18.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 801 | 18.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 805 | 18.32 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 820 | 18.32 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 832 | 18.33 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 856 | 18.34 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 867 | 18.34 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 887 | 18.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 899 | 18.36 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 917 | 18.37 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 918 | 18.37 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |