Os01g0853800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os01g0853800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.67 | 0.351 | 10.8 | 0.0973 | 1.46 | 1.12 | -0.551 | 1.55 | -0.0436 | 14.3 | 15.2 | 19 | -- | -- |
| 57.12 | 0.352 | 10.8 | -0.0965 | 1.49 | 1.03 | -0.235 | -- | -0.0912 | 14.3 | 16.79 | 18 | -- | -- |
| 56.55 | 0.353 | 10.8 | 0.00825 | 1.48 | 1.09 | -- | 0.941 | -0.063 | 14.3 | 15.2 | 19 | -- | -- |
| 57.08 | 0.352 | 10.8 | -0.127 | 1.47 | 1.02 | -- | -- | -0.104 | 14.3 | 17.47 | 18 | -- | -- |
| 141.92 | 0.555 | 10.8 | -0.329 | -- | 2.87 | -- | 1.32 | -0.321 | -- | 14.16 | 10 | -- | -- |
| 69.99 | 0.392 | 10.8 | 0.0938 | 1.81 | -- | 0.0526 | -- | 0.0612 | 14.3 | -- | -- | -- | -- |
| 70 | 0.392 | 10.8 | 0.0953 | 1.81 | -- | -- | -- | 0.0615 | 14.3 | -- | -- | -- | -- |
| 140.02 | 0.551 | 10.9 | -0.438 | -- | 2.38 | -- | -- | -0.363 | -- | 18.85 | 10 | -- | -- |
| 57.37 | 0.353 | 10.8 | -- | 1.5 | 0.916 | -- | -- | -0.0846 | 14.3 | 18.51 | 18 | -- | -- |
| 263.55 | 0.759 | 10.8 | 0.019 | -- | -- | -- | -- | 0.0173 | -- | -- | -- | -- | -- |
| 70.24 | 0.392 | 10.8 | -- | 1.81 | -- | -- | -- | 0.0509 | 14.3 | -- | -- | -- | -- |
| 145.28 | 0.561 | 10.9 | -- | -- | 2.27 | -- | -- | -0.302 | -- | 19.13 | 10 | -- | -- |
| 263.56 | 0.758 | 10.8 | -- | -- | -- | -- | -- | 0.0152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 5 | 51.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 6 | 51.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 17 | 52.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 25 | 52.45 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 30 | 52.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 32 | 52.69 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 50 | 53.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 62 | 53.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 68 | 53.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 69 | 53.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 74 | 53.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 134 | 54.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 138 | 54.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 54.90 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 212 | 55.38 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 13 |
| 227 | 55.52 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 231 | 55.53 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 19 |
| 252 | 55.70 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 254 | 55.72 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 11 |
| 256 | 55.73 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 21 |
| 263 | 55.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 272 | 55.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 273 | 55.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 275 | 55.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 277 | 55.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 288 | 55.90 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 305 | 56.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 333 | 56.18 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 350 | 56.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 401 | 56.46 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 405 | 56.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 412 | 56.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 427 | 56.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 473 | 56.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 491 | 56.80 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 21 |
| 506 | 56.83 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 13 |
| 518 | 56.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 546 | 56.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 562 | 57.00 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 14 |
| 573 | 57.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 591 | 57.09 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 10 |
| 594 | 57.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 596 | 57.12 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 22 |
| 616 | 57.17 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 625 | 57.19 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 634 | 57.21 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 637 | 57.23 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 643 | 57.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 652 | 57.25 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 682 | 57.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 709 | 57.33 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 752 | 57.37 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 754 | 57.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 756 | 57.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 772 | 57.39 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 795 | 57.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 799 | 57.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 810 | 57.44 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 850 | 57.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 875 | 57.51 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 899 | 57.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 903 | 57.54 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 21 |
| 951 | 57.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 978 | 57.61 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 19 |
| 988 | 57.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 996 | 57.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 3 |