Os01g0851400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Machado-Joseph disease protein MJD family protein.
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Os01g0851400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Machado-Joseph disease protein MJD family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.21 | 0.532 | 8.46 | 0.104 | 0.292 | 1.12 | -0.116 | 2 | -0.449 | 20.6 | 68 | 4709 | -- | -- |
| 134.06 | 0.539 | 8.46 | 0.0778 | 0.285 | 1.26 | -0.0452 | -- | -0.437 | 20.9 | 67.73 | 4712 | -- | -- |
| 128.25 | 0.527 | 8.46 | 0.107 | 0.292 | 1.12 | -- | 1.99 | -0.449 | 20.6 | 67.98 | 4709 | -- | -- |
| 134.06 | 0.539 | 8.46 | 0.0854 | 0.291 | 1.26 | -- | -- | -0.437 | 21 | 67.77 | 4709 | -- | -- |
| 132.33 | 0.536 | 8.45 | 0.125 | -- | 1.12 | -- | 1.94 | -0.474 | -- | 67.93 | 5000 | -- | -- |
| 161.43 | 0.596 | 8.47 | 0.0464 | 0.364 | -- | 0.0137 | -- | -0.489 | 20 | -- | -- | -- | -- |
| 161.43 | 0.595 | 8.47 | 0.046 | 0.364 | -- | -- | -- | -0.489 | 20 | -- | -- | -- | -- |
| 135.85 | 0.543 | 8.48 | 0.147 | -- | 1.43 | -- | -- | -0.711 | -- | 70 | 6586 | -- | -- |
| 134.24 | 0.54 | 8.46 | -- | 0.293 | 1.26 | -- | -- | -0.446 | 21 | 67.89 | 4709 | -- | -- |
| 168.68 | 0.607 | 8.46 | 0.0424 | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
| 161.49 | 0.594 | 8.47 | -- | 0.364 | -- | -- | -- | -0.495 | 20 | -- | -- | -- | -- |
| 135.94 | 0.543 | 8.51 | -- | -- | 1.39 | -- | -- | -0.733 | -- | 70.95 | 6586 | -- | -- |
| 168.73 | 0.606 | 8.46 | -- | -- | -- | -- | -- | -0.499 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.12 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 124.75 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 7 | 126.85 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 8 | 126.92 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 15 | 126.99 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 10 | 7 |
| 18 | 127.01 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 27 | 127.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 30 | 127.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 31 | 127.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 34 | 127.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 40 | 127.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 42 | 127.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 81 | 127.45 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 82 | 127.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 94 | 127.52 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 97 | 127.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 109 | 127.60 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 148 | 127.76 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 188 | 128.02 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 206 | 128.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 209 | 128.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 225 | 128.14 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 272 | 128.27 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 347 | 128.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 351 | 128.53 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 357 | 128.54 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 379 | 128.62 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 409 | 128.72 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 413 | 128.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 485 | 128.87 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 509 | 128.92 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 515 | 128.94 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 521 | 128.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 522 | 128.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 526 | 128.98 | humidity | 60.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 539 | 129.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 544 | 129.02 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 558 | 129.05 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 574 | 129.09 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 637 | 129.25 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 23 | NA |
| 650 | 129.25 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 654 | 129.26 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 655 | 129.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 656 | 129.26 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 661 | 129.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 673 | 129.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 686 | 129.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 805 | 129.45 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 814 | 129.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 844 | 129.49 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 888 | 129.52 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 925 | 129.57 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 933 | 129.58 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |