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Os01g0846900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription initiation factor TFIID domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0173) R2 : 0.169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.35 (0.0364) R2dN8 : 0.218 R2N8 : 0.169
σ : 0.325
deviance : 48.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.33 0.212 11.9 0.624 0.154 0.414 -0.0485 -0.0699 0.451 0.235 69 8 -- --
20.24 0.211 11.9 0.619 0.149 0.434 -0.0691 -- 0.444 0.438 64.55 6 -- --
20.24 0.211 11.9 0.625 0.149 0.431 -- -0.0812 0.447 0.399 65.33 6 -- --
20.26 0.211 11.9 0.622 0.149 0.428 -- -- 0.446 0.402 65.33 6 -- --
20.95 0.214 11.9 0.626 -- 0.539 -- -0.0949 0.456 -- 65.33 6 -- --
24.3 0.231 11.9 0.624 0.469 -- 0.0287 -- 0.411 1.78 -- -- -- --
24.31 0.231 11.9 0.623 0.469 -- -- -- 0.411 1.78 -- -- -- --
20.98 0.214 11.9 0.623 -- 0.537 -- -- 0.455 -- 65.33 6 -- --
30.44 0.258 11.9 -- 0.157 0.432 -- -- 0.377 0.577 65.33 6 -- --
37.64 0.287 11.9 0.643 -- -- -- -- 0.421 -- -- -- -- --
34.55 0.275 12 -- 0.48 -- -- -- 0.341 1.82 -- -- -- --
31.2 0.261 11.9 -- -- 0.547 -- -- 0.387 -- 65.33 6 -- --
48.53 0.325 12 -- -- -- -- -- 0.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.21 humidity 60 10 > th dose dependent rect. 9 23
2 20.29 humidity 70 10 > th dose dependent rect. 7 23
4 20.37 humidity 70 10 > th dose dependent rect. 11 23
5 20.39 humidity 70 10 > th dose dependent no NA NA
7 20.42 humidity 70 10 > th dose dependent rect. 15 23
8 20.42 humidity 70 10 > th dose dependent rect. 17 23
10 20.43 humidity 70 10 > th dose dependent rect. 13 23
24 20.58 temperature 20 30 > th dose dependent rect. 19 23
25 20.63 humidity 80 10 > th dose dependent sin 23 NA
38 20.68 humidity 70 10 > th dose dependent rect. 21 23
48 20.75 humidity 80 1440 < th dose independent rect. 11 3
49 20.75 humidity 80 30 < th dose independent rect. 7 11
53 20.78 humidity 80 1440 > th dose independent rect. 11 3
56 20.78 humidity 90 30 < th dose dependent rect. 19 23
59 20.80 humidity 80 30 < th dose independent rect. 3 15
67 20.82 humidity 70 10 > th dose dependent rect. 24 23
77 20.86 humidity 70 10 > th dose dependent rect. 2 17
80 20.87 temperature 20 10 > th dose dependent rect. 6 12
81 20.87 temperature 20 10 > th dose dependent rect. 6 20
88 20.89 radiation 20 30 < th dose dependent rect. 10 22
111 20.95 humidity 70 10 > th dose dependent rect. 10 9
118 20.96 humidity 80 30 < th dose independent rect. 19 23
119 20.96 humidity 70 10 > th dose dependent rect. 24 19
125 20.97 humidity 60 90 > th dose dependent rect. 11 8
137 20.97 radiation 10 90 < th dose dependent rect. 20 23
144 20.99 humidity 70 10 > th dose dependent rect. 24 21
153 21.00 temperature 20 10 > th dose dependent rect. 6 23
170 21.03 radiation 10 90 < th dose dependent no NA NA
174 21.04 temperature 20 10 > th dose dependent rect. 6 18
178 21.05 humidity 90 10 < th dose dependent rect. 3 15
194 21.08 humidity 70 10 > th dose dependent rect. 2 21
201 21.09 humidity 90 10 < th dose dependent rect. 6 12
203 21.09 radiation 10 30 < th dose dependent rect. 13 19
220 21.11 temperature 20 10 > th dose dependent rect. 6 16
226 21.12 humidity 70 1440 > th dose dependent rect. 11 3
229 21.12 humidity 90 10 < th dose dependent rect. 23 19
235 21.12 radiation 10 90 < th dose dependent rect. 13 23
236 21.12 radiation 10 90 < th dose dependent rect. 15 23
237 21.13 temperature 25 30 > th dose independent rect. 19 23
265 21.17 radiation 1 30 > th dose independent rect. 6 12
272 21.17 radiation 20 30 < th dose dependent rect. 7 23
299 21.21 radiation 1 30 < th dose independent rect. 5 14
318 21.22 temperature 20 10 > th dose dependent rect. 23 23
322 21.23 temperature 25 30 < th dose independent rect. 2 18
367 21.26 humidity 90 10 < th dose dependent rect. 3 21
368 21.26 temperature 20 10 > th dose dependent rect. 4 22
381 21.27 temperature 25 10 > th dose independent rect. 1 17
419 21.29 humidity 90 10 < th dose dependent rect. 23 23
435 21.30 humidity 90 10 < th dose dependent rect. 6 18
466 21.32 temperature 20 10 > th dose dependent rect. 23 19
477 21.33 humidity 80 30 > th dose independent rect. 7 23
494 21.33 radiation 10 30 < th dose dependent rect. 17 23
496 21.34 humidity 70 90 > th dose independent rect. 11 8
524 21.35 humidity 90 10 < th dose dependent rect. 6 23
526 21.36 temperature 20 10 > th dose dependent no NA NA
527 21.36 humidity 90 10 < th dose dependent no NA NA
533 21.36 humidity 90 10 < th dose dependent rect. 6 16
538 21.36 temperature 20 10 > th dose dependent rect. 1 23
547 21.37 temperature 25 10 > th dose independent rect. 12 23
551 21.37 radiation 1 30 < th dose dependent rect. 5 14
583 21.39 temperature 25 10 > th dose dependent rect. 1 17
604 21.40 humidity 80 30 > th dose independent rect. 2 17
649 21.43 humidity 80 30 > th dose independent sin 23 NA
741 21.47 radiation 1 30 < th dose independent sin 0 NA
752 21.47 temperature 30 10 < th dose dependent rect. 2 18
771 21.48 radiation 1 30 > th dose independent sin 0 NA
790 21.49 humidity 80 10 > th dose independent rect. 10 8
791 21.49 temperature 25 30 < th dose independent rect. 24 20
856 21.51 temperature 25 10 > th dose independent rect. 23 19
882 21.52 humidity 70 90 > th dose independent rect. 11 19
903 21.52 temperature 30 10 < th dose dependent rect. 24 23
906 21.53 humidity 80 30 < th dose independent sin 0 NA
908 21.53 temperature 25 10 > th dose independent rect. 1 21
909 21.53 temperature 25 10 > th dose independent rect. 23 23
936 21.54 temperature 30 10 < th dose dependent rect. 24 21
947 21.54 humidity 90 10 < th dose dependent rect. 13 23