BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0846900 Os01g0846900|AK101755
(542 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17440.1 | chr1:5984407-5987663 REVERSE LENGTH=684 199 4e-51
AT3G10070.1 | chr3:3104195-3106798 REVERSE LENGTH=540 126 4e-29
>AT1G17440.1 | chr1:5984407-5987663 REVERSE LENGTH=684
Length = 683
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 126/177 (71%), Gaps = 11/177 (6%)
Query: 357 SPRISASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLLGKRKIQDLVSQVDPL 416
SPR+ + QKS++LTGSQP SG T GGS+SQG E TNQLLGKRKIQDLVSQVD
Sbjct: 484 SPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDVH 543
Query: 417 GKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLLHLEKNWHLSVPGFLR 476
K+DP+VEDLLLE+ADDFIDSVT+FAC+LAKHRKSSVLE KD+LLHLEKN HL++PGF
Sbjct: 544 AKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLHLTIPGFSS 603
Query: 477 EDKNPQR------HP-----VKVSVDPQQPECDAAGIRSTGNKLVINNSVANHQTRP 522
EDK + H V+ ++ +PE +A+ + T + ++N + NH RP
Sbjct: 604 EDKRQTKTVPTDLHKKRLAMVRALLESSKPETNASNSKETMRQAMVNPNGPNHLLRP 660
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 90/168 (53%), Gaps = 24/168 (14%)
Query: 144 ARAAMLSQ-GQIGMLQGQGNAASAAHYGLQSQMMA-QPRQK-GMVQGAQFNTANAAQALQ 200
+RA ++ Q G + ML G AA AA +Q Q++A PRQK GMVQG+QF+ ++ Q LQ
Sbjct: 230 SRAGLVGQSGHLPMLNG---AAGAAQMNIQPQLLAASPRQKSGMVQGSQFHPGSSGQQLQ 286
Query: 201 XXXXXXXXXXXXXNGTIP-----YNQQRFAHAQAQLRPQQTSQQGTL-SPQVVGQGLTRT 254
+ Y QQR Q + QQ SQQ L SPQV Q L RT
Sbjct: 287 GMQAMGMMGSLNLTSQMRGNPALYAQQRINPGQMR---QQLSQQNALTSPQV--QNLQRT 341
Query: 255 ASIAALNPQLPGSSTNGP--MAQMSLPQKQQQAAWLKQMQSSLGSPVS 300
+S+A +NPQL G + NG M Q SL Q+Q WLKQM S + SP S
Sbjct: 342 SSLAFMNPQLSGLAQNGQAGMMQNSLSQQQ----WLKQM-SGITSPNS 384
>AT3G10070.1 | chr3:3104195-3106798 REVERSE LENGTH=540
Length = 539
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 72/93 (77%)
Query: 398 NQLLGKRKIQDLVSQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAK 457
+++LGKR I +L+ Q+DP K+DPEVED+L +IA+DF++S+T F C+LAKHRKS +LEAK
Sbjct: 397 DRILGKRSIHELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAK 456
Query: 458 DVLLHLEKNWHLSVPGFLREDKNPQRHPVKVSV 490
D+LLH+E+NW++ PGF ++ R P+ +
Sbjct: 457 DILLHVERNWNIRPPGFSSDEFKTFRKPLTTDI 489
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,223,750
Number of extensions: 289215
Number of successful extensions: 855
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 3
Length of query: 542
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 439
Effective length of database: 8,282,721
Effective search space: 3636114519
Effective search space used: 3636114519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)