Os01g0843800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0843800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 399.31 | 0.939 | 3.2 | 0.907 | 0.0419 | -0.925 | -1.44 | -0.387 | -0.129 | 1.02 | 19.84 | 1081 | -- | -- |
| 399.61 | 0.931 | 3.19 | 0.961 | 0.0387 | -0.865 | -1.51 | -- | -0.116 | 0.993 | 19.84 | 1080 | -- | -- |
| 407.52 | 0.94 | 3.22 | 0.891 | 0.0381 | -0.931 | -- | -0.748 | -0.155 | 23.7 | 19.9 | 1080 | -- | -- |
| 409.14 | 0.942 | 3.18 | 1 | 0.0488 | -0.83 | -- | -- | -0.118 | 3.76 | 19.87 | 1080 | -- | -- |
| 407.46 | 0.94 | 3.21 | 0.872 | -- | -0.951 | -- | -0.834 | -0.141 | -- | 19.9 | 1080 | -- | -- |
| 415.42 | 0.956 | 3.22 | 0.623 | 0.0598 | -- | 1.41 | -- | -0.286 | 12.6 | -- | -- | -- | -- |
| 423.89 | 0.964 | 3.22 | 0.676 | 0.0692 | -- | -- | -- | -0.28 | 10.1 | -- | -- | -- | -- |
| 409.27 | 0.942 | 3.18 | 1 | -- | -0.826 | -- | -- | -0.116 | -- | 19.86 | 1097 | -- | -- |
| 430.48 | 0.966 | 3.22 | -- | 0.0255 | -0.53 | -- | -- | -0.296 | 3.47 | 18.96 | 789 | -- | -- |
| 424.18 | 0.962 | 3.22 | 0.675 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 435.93 | 0.977 | 3.23 | -- | 0.0676 | -- | -- | -- | -0.355 | 9.35 | -- | -- | -- | -- |
| 430.52 | 0.966 | 3.22 | -- | -- | -0.528 | -- | -- | -0.296 | -- | 18.95 | 789 | -- | -- |
| 436.2 | 0.975 | 3.24 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 384.49 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 3 |
| 2 | 384.69 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 3 |
| 3 | 385.24 | temperature | 25.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 31 | 389.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 33 | 389.68 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 36 | 389.68 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 52 | 392.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 57 | 392.44 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 60 | 392.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 77 | 393.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 83 | 394.17 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 90 | 394.60 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 95 | 394.63 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 105 | 394.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 190 | 396.87 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 11 |
| 193 | 396.99 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 196 | 397.03 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 211 | 397.22 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 227 | 397.43 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 235 | 397.60 | wind | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 236 | 397.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 240 | 397.72 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 250 | 397.90 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 254 | 397.93 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 256 | 397.97 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 261 | 398.06 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 267 | 398.18 | wind | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 271 | 398.27 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 280 | 398.46 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 281 | 398.47 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 284 | 398.52 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 9 |
| 301 | 398.72 | temperature | 20.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 309 | 398.85 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 312 | 398.87 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 313 | 398.87 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 314 | 398.89 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 338 | 399.05 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 339 | 399.05 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 343 | 399.07 | temperature | 20.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 355 | 399.19 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 356 | 399.19 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 6 |
| 373 | 399.32 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 374 | 399.33 | temperature | 20.0 | 30 | < th | dose independent | rect. | 2 | 2 |
| 377 | 399.33 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 383 | 399.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 394 | 399.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 402 | 399.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 407 | 399.46 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 417 | 399.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 427 | 399.54 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 428 | 399.54 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 435 | 399.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 437 | 399.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 475 | 399.73 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 495 | 399.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 497 | 399.82 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 500 | 399.82 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 513 | 399.87 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 525 | 399.91 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 530 | 399.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 552 | 399.94 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 558 | 399.95 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 566 | 399.97 | temperature | 20.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 568 | 399.99 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 577 | 400.01 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 579 | 400.01 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 591 | 400.04 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 592 | 400.04 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 7 |
| 603 | 400.04 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 622 | 400.10 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 645 | 400.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 648 | 400.16 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 669 | 400.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 680 | 400.22 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 710 | 400.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 22 |
| 807 | 400.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 810 | 400.51 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 817 | 400.52 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 854 | 400.59 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 855 | 400.59 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 899 | 400.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 5 |
| 909 | 400.67 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 953 | 400.73 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 966 | 400.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 994 | 400.81 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 998 | 400.82 | temperature | 20.0 | 720 | < th | dose independent | sin | 15 | NA |