BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0843800 Os01g0843800|Os01g0843800
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43290.1  | chr5:17371987-17373083 REVERSE LENGTH=275           55   3e-08
AT1G64000.1  | chr1:23747434-23748883 FORWARD LENGTH=196           46   9e-06

>AT5G43290.1 | chr5:17371987-17373083 REVERSE LENGTH=275
          Length = 274

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 90  SVYSGPTIRDIEKAXXXXXXXX----XXXXXXXXXXXXXXVEAESKYTSKVRSCGGKMPA 145
           ++YSGP I+DI  A                          +    +YT KV++    M  
Sbjct: 55  TLYSGPRIQDIANALALVEPLTHPVREISKSTVPLLERSTLSKVDRYTLKVKNNSNGMCD 114

Query: 146 DGYKWRKYGQKSIKNNPHPR 165
           DGYKWRKYGQKSIKN+P+PR
Sbjct: 115 DGYKWRKYGQKSIKNSPNPR 134



>AT1G64000.1 | chr1:23747434-23748883 FORWARD LENGTH=196
          Length = 195

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 146 DGYKWRKYGQKSIKNNPHPRCATR 169
           DGY+WRKYGQKS+KNN HPR   R
Sbjct: 115 DGYRWRKYGQKSVKNNAHPRSYYR 138



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,092,989
Number of extensions: 83966
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 3
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)