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Os01g0840700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L36.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0298) R2 : 0.289
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.06 (0.078) R2dC : 0.289 R2C : 0.288
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0126 (0.0627) R2dN8 : 8.16e-05 R2N8 : -0.000625
σ : 0.562
deviance : 144.41
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.57 0.533 11.8 -0.461 1.08 -0.526 0.631 1.35 -0.258 17.4 20.28 4359 -- --
130.76 0.533 11.7 -0.137 1.11 -0.672 0.726 -- -0.17 17.4 19.5 4151 -- --
129.55 0.53 11.8 -0.476 1.08 -0.525 -- 1.4 -0.259 17.4 20.3 4341 -- --
130.89 0.533 11.7 -0.241 1.07 -0.796 -- -- -0.15 17.3 18.7 4079 -- --
189.67 0.641 11.7 -0.517 -- -0.414 -- 1.62 -0.281 -- 20.9 4582 -- --
141.68 0.558 11.7 0.228 1.06 -- 0.751 -- 0.00911 17.5 -- -- -- --
143.06 0.56 11.7 0.226 1.06 -- -- -- 0.0126 17.4 -- -- -- --
189.78 0.642 11.7 -0.577 -- -0.985 -- -- -0.261 -- 17.6 15046 -- --
132.04 0.535 11.7 -- 1.08 -0.723 -- -- -0.137 17.4 18.7 4077 -- --
201.92 0.664 11.6 0.19 -- -- -- -- -0.0136 -- -- -- -- --
144.41 0.562 11.7 -- 1.06 -- -- -- -0.0126 17.4 -- -- -- --
192.42 0.646 11.7 -- -- -0.707 -- -- -0.147 -- 18.91 3321 -- --
202.88 0.665 11.6 -- -- -- -- -- -0.0348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.07 temperature 10.0 90 > th dose dependent rect. 8 19
2 114.11 temperature 15.0 270 > th dose dependent rect. 9 1
4 114.70 temperature 10.0 10 > th dose dependent rect. 9 18
7 114.94 temperature 10.0 90 > th dose dependent rect. 8 6
10 115.50 temperature 10.0 10 > th dose dependent rect. 9 5
30 117.23 temperature 10.0 270 > th dose dependent rect. 6 6
38 117.62 humidity 50.0 90 > th dose independent rect. 8 6
66 118.59 temperature 10.0 43200 > th dose independent rect. 10 5
80 119.00 wind 1.0 30 > th dose independent rect. 9 5
82 119.02 temperature 10.0 270 > th dose dependent rect. 19 17
85 119.20 precipitation 0.1 90 < th dose independent rect. 8 6
86 119.20 precipitation 0.1 90 < th dose dependent rect. 8 6
87 119.22 temperature 10.0 10 > th dose dependent rect. 9 15
88 119.27 temperature 10.0 90 > th dose dependent rect. 8 15
92 119.44 temperature 10.0 10 > th dose independent rect. 9 5
94 119.44 atmosphere 995.0 10 > th dose independent rect. 9 5
95 119.44 atmosphere 1015.0 10 < th dose independent rect. 9 5
96 119.44 precipitation 0.1 10 < th dose independent rect. 9 5
97 119.44 temperature 10.0 10 > th dose independent rect. 14 19
98 119.44 precipitation 0.1 10 < th dose dependent rect. 9 5
101 119.49 temperature 10.0 90 > th dose independent rect. 8 6
102 119.49 atmosphere 995.0 90 > th dose independent rect. 8 6
103 119.49 atmosphere 1015.0 90 < th dose independent rect. 8 6
104 119.49 temperature 10.0 90 > th dose independent rect. 14 18
106 119.55 radiation 1.0 10 > th dose independent rect. 9 5
110 119.62 wind 9.0 90 < th dose independent rect. 8 6
130 119.80 wind 9.0 10 < th dose independent rect. 9 5
132 119.85 temperature 10.0 1440 > th dose independent rect. 10 5
135 119.85 radiation 40.0 90 < th dose independent rect. 14 18
136 119.85 temperature 10.0 1440 > th dose independent rect. 15 19
142 119.87 wind 9.0 90 < th dose independent rect. 14 18
144 119.88 precipitation 0.1 90 < th dose independent rect. 14 18
145 119.88 precipitation 0.1 90 < th dose dependent rect. 14 18
146 119.89 atmosphere 995.0 10 > th dose independent rect. 14 19
147 119.90 atmosphere 995.0 90 > th dose independent rect. 14 18
150 119.97 radiation 40.0 10 < th dose independent rect. 12 21
152 119.98 radiation 40.0 10 < th dose independent rect. 14 19
153 119.99 wind 9.0 10 < th dose independent rect. 14 19
157 120.05 humidity 50.0 270 > th dose independent rect. 9 1
159 120.07 radiation 1.0 270 > th dose dependent rect. 9 1
169 120.15 wind 5.0 90 < th dose independent rect. 3 5
175 120.21 precipitation 0.1 10 < th dose independent rect. 14 19
177 120.21 precipitation 0.1 10 < th dose dependent rect. 14 19
182 120.25 temperature 20.0 90 > th dose dependent rect. 19 19
196 120.41 precipitation 0.1 270 < th dose independent rect. 9 1
197 120.41 precipitation 0.1 270 < th dose dependent rect. 9 1
202 120.46 wind 9.0 270 < th dose independent rect. 9 1
203 120.46 temperature 10.0 270 > th dose independent rect. 9 1
204 120.46 atmosphere 995.0 270 > th dose independent rect. 9 1
205 120.46 atmosphere 1015.0 270 < th dose independent rect. 9 1
206 120.46 temperature 10.0 270 > th dose independent rect. 10 23
209 120.51 temperature 25.0 270 > th dose dependent rect. 19 17
213 120.61 humidity 90.0 270 < th dose independent rect. 9 1
214 120.63 wind 1.0 270 > th dose independent rect. 9 1
233 120.81 radiation 1.0 270 > th dose independent rect. 9 1
243 120.92 humidity 90.0 90 < th dose independent rect. 8 6
244 120.92 atmosphere 1015.0 10 < th dose dependent rect. 9 5
247 120.95 precipitation 0.1 90 < th dose independent rect. 3 5
248 120.95 precipitation 0.1 90 < th dose dependent rect. 3 5
257 120.98 humidity 90.0 10 < th dose independent rect. 9 5
282 121.19 atmosphere 1015.0 270 < th dose dependent rect. 9 1
292 121.26 temperature 10.0 90 > th dose independent rect. 3 5
294 121.26 temperature 30.0 90 < th dose independent rect. 3 5
295 121.26 humidity 50.0 90 > th dose independent rect. 3 5
297 121.26 atmosphere 995.0 90 > th dose independent rect. 3 5
298 121.26 atmosphere 1015.0 90 < th dose independent rect. 3 5
299 121.26 temperature 10.0 90 > th dose independent rect. 8 19
300 121.26 humidity 50.0 10 > th dose independent rect. 14 19
305 121.31 wind 5.0 270 < th dose independent rect. 3 2
309 121.34 precipitation 0.1 90 < th dose independent rect. 8 19
310 121.34 precipitation 0.1 90 < th dose dependent rect. 8 19
315 121.40 wind 9.0 90 < th dose independent rect. 8 19
317 121.42 radiation 40.0 90 < th dose independent rect. 3 5
321 121.49 humidity 50.0 90 > th dose independent rect. 14 18
339 121.69 radiation 20.0 270 > th dose independent rect. 9 1
340 121.70 humidity 50.0 30 > th dose independent rect. 9 19
349 121.74 wind 5.0 10 < th dose independent rect. 3 6
366 121.88 wind 9.0 90 < th dose dependent rect. 3 5
390 121.93 temperature 10.0 10 > th dose dependent rect. 20 18
406 122.01 precipitation 0.1 270 < th dose independent rect. 3 2
408 122.01 precipitation 0.1 270 < th dose dependent rect. 3 2
411 122.04 precipitation 0.1 10 < th dose independent rect. 9 18
413 122.04 precipitation 0.1 10 < th dose dependent rect. 9 18
414 122.05 precipitation 0.1 10 < th dose independent rect. 3 6
415 122.05 precipitation 0.1 10 < th dose dependent rect. 3 6
421 122.07 atmosphere 1015.0 10 < th dose independent rect. 14 19
426 122.08 humidity 50.0 270 > th dose independent rect. 6 7
450 122.22 temperature 10.0 10 > th dose independent rect. 4 5
452 122.22 temperature 30.0 10 < th dose independent rect. 4 5
453 122.22 humidity 50.0 10 > th dose independent rect. 4 5
455 122.22 atmosphere 995.0 10 > th dose independent rect. 4 5
456 122.22 atmosphere 1015.0 10 < th dose independent rect. 4 5
457 122.22 temperature 10.0 10 > th dose independent rect. 9 19
484 122.27 atmosphere 995.0 90 > th dose independent rect. 8 19
516 122.35 temperature 30.0 270 < th dose dependent rect. 3 2
519 122.36 wind 9.0 10 < th dose independent rect. 9 19
523 122.38 wind 9.0 270 < th dose independent rect. 5 22
525 122.40 temperature 10.0 270 > th dose independent rect. 3 2
528 122.40 temperature 30.0 270 < th dose independent rect. 3 2
529 122.40 humidity 50.0 270 > th dose independent rect. 3 2
532 122.40 atmosphere 995.0 270 > th dose independent rect. 3 2
533 122.40 atmosphere 1010.0 270 < th dose independent rect. 3 2
535 122.40 radiation 20.0 270 < th dose independent rect. 3 2
540 122.40 temperature 10.0 270 > th dose independent rect. 5 22
559 122.42 radiation 40.0 10 < th dose independent rect. 4 16
568 122.44 radiation 40.0 270 < th dose dependent rect. 3 2
597 122.53 radiation 40.0 90 < th dose independent rect. 4 15
599 122.53 radiation 1.0 270 < th dose dependent rect. 3 2
606 122.56 radiation 1.0 270 < th dose independent rect. 3 2
628 122.60 atmosphere 1015.0 90 < th dose independent rect. 8 19
636 122.64 wind 9.0 270 < th dose dependent rect. 4 1
642 122.67 wind 9.0 10 < th dose dependent rect. 4 5
674 122.74 wind 7.0 270 < th dose independent rect. 17 9
681 122.76 wind 1.0 270 > th dose independent rect. 3 2
708 122.84 temperature 30.0 90 < th dose independent rect. 3 14
710 122.85 precipitation 0.1 270 < th dose independent rect. 10 22
711 122.85 precipitation 0.1 270 < th dose dependent rect. 10 22
751 123.03 wind 9.0 270 < th dose dependent rect. 8 2
761 123.09 atmosphere 995.0 10 > th dose independent rect. 9 19
766 123.12 precipitation 0.1 270 < th dose independent rect. 5 22
767 123.12 precipitation 0.1 270 < th dose dependent rect. 5 22
769 123.14 atmosphere 995.0 90 > th dose dependent rect. 3 5
771 123.16 humidity 50.0 270 > th dose dependent rect. 4 1
800 123.31 precipitation 0.1 270 < th dose independent rect. 6 7
802 123.31 precipitation 0.1 270 < th dose dependent rect. 6 7
806 123.34 wind 9.0 270 < th dose independent rect. 6 7
808 123.35 radiation 10.0 270 < th dose independent rect. 17 9
813 123.37 temperature 10.0 1440 > th dose independent rect. 4 6
816 123.37 atmosphere 995.0 1440 > th dose independent rect. 4 6
817 123.37 atmosphere 1015.0 1440 < th dose independent rect. 4 6
819 123.37 temperature 10.0 1440 > th dose independent rect. 10 18
823 123.38 temperature 10.0 270 > th dose independent rect. 6 7
824 123.38 atmosphere 995.0 270 > th dose independent rect. 6 7
825 123.38 atmosphere 1015.0 270 < th dose independent rect. 6 7
838 123.41 wind 9.0 270 < th dose independent rect. 10 23
871 123.52 radiation 1.0 270 > th dose independent rect. 6 7
881 123.53 atmosphere 1000.0 10 > th dose dependent rect. 3 6
891 123.54 wind 1.0 30 > th dose independent rect. 14 19
911 123.59 atmosphere 1015.0 10 < th dose independent rect. 9 19
949 123.65 precipitation 0.1 270 < th dose independent rect. 2 15
954 123.65 precipitation 0.1 270 < th dose dependent rect. 2 15
955 123.66 humidity 50.0 43200 < th dose dependent rect. 8 1
969 123.70 radiation 1.0 270 < th dose dependent rect. 3 5
985 123.76 temperature 10.0 270 > th dose independent rect. 17 9
989 123.76 temperature 10.0 270 > th dose independent rect. 2 15
990 123.76 atmosphere 1015.0 270 < th dose independent rect. 2 15