BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0840700 Os01g0840700|J075048K21
(110 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53740.2 | chr3:19913921-19914813 REVERSE LENGTH=113 164 6e-42
AT2G37600.1 | chr2:15774410-15775203 REVERSE LENGTH=114 164 1e-41
AT5G02450.1 | chr5:533501-534394 FORWARD LENGTH=109 160 1e-40
>AT3G53740.2 | chr3:19913921-19914813 REVERSE LENGTH=113
Length = 112
Score = 164 bits (416), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 96/112 (85%), Gaps = 2/112 (1%)
Query: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRI 60
M PQ K+GLFVG+NKGHVVT+REL PRP RKGK++KR F+R LI+EV G APYEKRI
Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRS--AGTTDKKK 110
TELLKVGKDKRALKVAKRKLGTHKRAK+KREEM+ V+RKMRS G T+KKK
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
>AT2G37600.1 | chr2:15774410-15775203 REVERSE LENGTH=114
Length = 113
Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 91/104 (87%)
Query: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRI 60
M P K+GLFVG+NKGHVVT+REL PRP+ RKGK++KR F+R LIREV G APYEKRI
Sbjct: 1 MTTPAVKTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRSAG 104
TELLKVGKDKRALKVAKRKLGTHKRAK+KREEM+ V+RKMRS G
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLG 104
>AT5G02450.1 | chr5:533501-534394 FORWARD LENGTH=109
Length = 108
Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 95/105 (90%), Gaps = 2/105 (1%)
Query: 8 SGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVG 67
+GLFVG+NKGHVVTKRE PPRP++RKGK++KR F+R LI+EV G APYEKRITELLKVG
Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRS--AGTTDKKK 110
KDKRALKVAKRKLGTHKRAK+KREEM+ V+RKMRS AG ++KKK
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,401,353
Number of extensions: 93066
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 3
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)