FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0839700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin carrier protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0142) R2 : 0.486
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.773 (0.0373) R2dC : 0.487 R2C : 0.482
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0489 (0.0299) R2dN8 : 0.00389 R2N8 : -0.000806
σ : 0.268
deviance : 32.84
__
_____
C
peak time of C : 5.81
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.61 0.233 12.3 0.00418 0.766 -0.00753 -0.728 1.84 -0.00166 5.97 25.58 2629 -- --
25.3 0.234 12.3 -0.488 0.743 0.204 -0.585 -- -0.0567 5.9 29.41 5624 -- --
25.82 0.237 12.3 0.00804 0.775 -0.0171 -- 1.98 0.00621 5.86 25.08 2338 -- --
26.39 0.239 12.3 -0.485 0.766 0.186 -- -- -0.06 5.8 29.6 5645 -- --
54.65 0.346 12.3 -0.283 -- -0.485 -- 0.578 -0.0318 -- 25.08 2338 -- --
26.85 0.243 12.3 -0.424 0.783 -- -0.685 -- -0.0991 5.91 -- -- -- --
27.96 0.248 12.3 -0.43 0.78 -- -- -- -0.0968 5.78 -- -- -- --
54.8 0.346 12.3 -0.347 -- -0.442 -- -- -0.049 -- 25.08 2338 -- --
32.28 0.265 12.3 -- 0.781 0.111 -- -- -0.0368 5.83 30.21 6213 -- --
59.49 0.36 12.3 -0.406 -- -- -- -- -0.0784 -- -- -- -- --
32.84 0.268 12.3 -- 0.773 -- -- -- -0.0489 5.81 -- -- -- --
57.45 0.354 12.3 -- -- -0.497 -- -- 0.0155 -- 23.9 2740 -- --
63.83 0.373 12.3 -- -- -- -- -- -0.0334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.43 temperature 15.0 270 > th dose independent rect. 7 9
2 23.46 humidity 90.0 270 < th dose independent rect. 20 7
4 23.54 wind 7.0 270 < th dose independent rect. 7 9
5 23.55 radiation 1.0 270 > th dose independent rect. 7 9
6 23.57 humidity 90.0 270 < th dose independent rect. 8 7
12 23.68 radiation 1.0 720 > th dose independent rect. 8 22
19 23.73 wind 1.0 270 > th dose independent rect. 10 16
21 23.74 radiation 1.0 720 > th dose independent rect. 8 11
26 23.74 humidity 90.0 270 < th dose independent rect. 10 16
42 23.82 atmosphere 1000.0 270 > th dose independent rect. 20 7
45 23.82 precipitation 0.1 270 < th dose independent rect. 7 9
46 23.82 precipitation 0.1 270 < th dose dependent rect. 7 9
49 23.86 atmosphere 1015.0 270 < th dose independent rect. 7 9
50 23.86 temperature 10.0 270 > th dose independent rect. 16 15
51 23.86 radiation 40.0 270 < th dose independent rect. 16 15
55 23.87 precipitation 0.1 270 < th dose independent rect. 16 15
56 23.87 wind 9.0 270 < th dose dependent rect. 8 7
57 23.87 precipitation 0.1 270 < th dose dependent rect. 16 15
60 23.89 wind 9.0 270 < th dose independent rect. 20 7
63 23.89 wind 9.0 270 < th dose independent rect. 16 15
64 23.89 atmosphere 995.0 270 > th dose dependent rect. 3 6
66 23.90 wind 1.0 270 > th dose independent rect. 20 7
68 23.90 temperature 10.0 270 > th dose independent rect. 20 7
69 23.90 temperature 30.0 270 < th dose independent rect. 20 7
70 23.90 humidity 50.0 270 > th dose independent rect. 20 7
74 23.90 radiation 1.0 270 < th dose independent rect. 20 7
79 23.90 wind 9.0 270 < th dose independent rect. 9 17
80 23.90 temperature 10.0 270 > th dose independent rect. 3 17
81 23.90 atmosphere 1015.0 270 < th dose independent rect. 3 17
83 23.90 radiation 1.0 270 < th dose dependent rect. 20 7
88 23.91 precipitation 0.1 270 < th dose independent rect. 20 7
92 23.91 humidity 90.0 270 < th dose independent rect. 23 16
95 23.91 precipitation 0.1 270 < th dose dependent rect. 20 7
109 23.93 radiation 40.0 270 < th dose independent rect. 2 7
113 23.93 atmosphere 995.0 270 > th dose dependent rect. 3 17
114 23.94 atmosphere 995.0 270 > th dose independent rect. 16 15
115 23.94 atmosphere 995.0 90 > th dose dependent rect. 5 17
117 23.95 atmosphere 995.0 270 > th dose independent rect. 3 17
121 23.96 atmosphere 995.0 10 > th dose dependent rect. 5 17
123 23.97 precipitation 0.1 270 < th dose independent rect. 9 17
127 23.97 precipitation 0.1 270 < th dose dependent rect. 9 17
128 23.98 radiation 1.0 720 > th dose independent sin 22 NA
137 23.99 precipitation 0.1 270 < th dose independent rect. 3 17
139 23.99 precipitation 0.1 270 < th dose dependent rect. 3 17
156 24.01 atmosphere 995.0 270 > th dose independent rect. 7 9
157 24.01 radiation 1.0 720 > th dose independent rect. 17 12
160 24.02 radiation 1.0 720 > th dose independent rect. 17 2
174 24.02 atmosphere 995.0 10 > th dose dependent rect. 5 15
175 24.03 precipitation 0.1 270 < th dose independent rect. 2 7
197 24.03 precipitation 0.1 270 < th dose dependent rect. 2 7
216 24.05 wind 7.0 270 < th dose independent rect. 2 7
218 24.05 temperature 10.0 270 > th dose independent rect. 2 7
220 24.05 humidity 50.0 270 > th dose independent rect. 2 7
222 24.05 atmosphere 995.0 270 > th dose independent rect. 2 7
223 24.05 atmosphere 1015.0 270 < th dose independent rect. 2 7
225 24.05 temperature 10.0 270 > th dose independent rect. 9 17
229 24.06 humidity 90.0 270 < th dose independent rect. 23 2
249 24.07 humidity 50.0 270 > th dose independent rect. 9 17
253 24.08 temperature 30.0 270 < th dose independent rect. 2 7
260 24.08 wind 7.0 270 < th dose independent rect. 22 15
332 24.12 wind 9.0 270 < th dose independent rect. 3 17
337 24.12 humidity 50.0 270 > th dose dependent rect. 2 8
383 24.16 atmosphere 995.0 270 > th dose independent rect. 9 17
393 24.17 wind 9.0 270 < th dose dependent rect. 20 7
395 24.17 radiation 40.0 270 < th dose dependent rect. 16 15
401 24.18 temperature 15.0 270 > th dose independent rect. 22 15
406 24.18 radiation 20.0 30 < th dose dependent sin 10 NA
407 24.18 humidity 60.0 43200 > th dose dependent rect. 11 2
411 24.18 wind 9.0 270 < th dose dependent rect. 10 16
413 24.18 wind 9.0 270 < th dose dependent rect. 9 18
433 24.19 humidity 60.0 43200 > th dose dependent rect. 10 4
462 24.21 temperature 30.0 270 < th dose independent rect. 9 18
486 24.23 wind 1.0 270 > th dose independent rect. 7 9
491 24.23 atmosphere 995.0 270 > th dose dependent rect. 21 6
500 24.24 radiation 1.0 90 < th dose independent rect. 21 13
506 24.24 humidity 60.0 43200 > th dose dependent rect. 9 6
532 24.25 radiation 1.0 90 < th dose independent rect. 21 11
535 24.25 radiation 1.0 90 < th dose independent rect. 21 15
540 24.25 humidity 90.0 43200 > th dose dependent rect. 12 2
579 24.27 wind 1.0 270 > th dose independent rect. 3 17
596 24.28 radiation 1.0 10 < th dose dependent rect. 22 14
608 24.29 radiation 1.0 10 < th dose independent rect. 22 14
611 24.29 temperature 30.0 270 < th dose independent rect. 10 16
616 24.29 humidity 70.0 43200 > th dose dependent rect. 7 4
617 24.29 humidity 90.0 43200 > th dose dependent rect. 12 4
623 24.29 radiation 1.0 90 < th dose dependent rect. 21 13
625 24.30 radiation 1.0 90 < th dose independent sin 10 NA
643 24.30 radiation 1.0 43200 < th dose dependent rect. 3 1
646 24.30 radiation 40.0 270 < th dose dependent rect. 3 7
647 24.30 radiation 10.0 10 < th dose dependent rect. 22 8
656 24.31 humidity 90.0 43200 > th dose independent rect. 12 2
676 24.31 radiation 1.0 90 < th dose dependent rect. 22 10
687 24.31 radiation 1.0 90 < th dose dependent rect. 21 15
705 24.32 radiation 1.0 10 < th dose independent rect. 22 9
710 24.32 humidity 50.0 270 > th dose independent rect. 16 15
730 24.33 wind 7.0 10 < th dose independent rect. 9 8
740 24.33 humidity 50.0 270 > th dose independent rect. 3 17
775 24.35 radiation 1.0 720 > th dose independent sin 14 NA
777 24.35 wind 5.0 43200 < th dose independent rect. 8 1
778 24.35 wind 1.0 270 > th dose independent rect. 23 2
796 24.35 humidity 90.0 43200 > th dose dependent rect. 15 1
804 24.36 wind 5.0 43200 > th dose independent rect. 8 1
818 24.36 wind 1.0 270 > th dose independent rect. 2 7
856 24.37 humidity 60.0 43200 > th dose dependent sin 23 NA
883 24.38 radiation 40.0 270 < th dose independent rect. 3 17
913 24.39 radiation 1.0 10 < th dose independent sin 9 NA
932 24.39 wind 5.0 43200 > th dose dependent rect. 8 1