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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0816500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Microtubule organization 1 protein (MOR1/GEM1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0317) R2 : 0.00451
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0958 (0.0667) R2dN8 : 0.00582 R2N8 : 0.00451
σ : 0.597
deviance : 163.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.21 0.589 2.95 -0.0715 0.0764 0.227 0.0278 -2.78 0.137 11.2 8.003 1156 -- --
157.6 0.585 2.98 -0.0399 0.0662 0.812 0.0717 -- 0.114 11.3 8.341 1156 -- --
157.21 0.584 2.95 -0.0704 0.0762 0.228 -- -2.78 0.137 11.4 8 1156 -- --
157.58 0.585 2.98 -0.0264 0.078 0.813 -- -- 0.129 11.4 8.3 1156 -- --
157.57 0.585 2.96 -0.0766 -- 0.193 -- -2.87 0.135 -- 8.068 1156 -- --
162.53 0.598 2.99 -0.146 0.0577 -- 0.143 -- 0.0799 10.3 -- -- -- --
162.61 0.597 2.99 -0.14 0.0571 -- -- -- 0.0806 11 -- -- -- --
157.22 0.584 2.98 -0.0753 -- 0.806 -- -- 0.107 -- 11.03 1161 -- --
157.6 0.585 2.98 -- 0.0801 0.818 -- -- 0.132 11.4 8.3 1156 -- --
162.81 0.596 2.99 -0.141 -- -- -- -- 0.0801 -- -- -- -- --
163.12 0.597 2.98 -- 0.0584 -- -- -- 0.0962 11.2 -- -- -- --
157.37 0.584 2.98 -- -- 0.825 -- -- 0.117 -- 11.25 1125 -- --
163.34 0.597 2.99 -- -- -- -- -- 0.0958 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.19 wind 3.0 30 > th dose dependent rect. 5 1
6 145.79 wind 3.0 30 > th dose independent rect. 5 1
24 149.17 radiation 1.0 10 < th dose independent rect. 6 1
28 150.86 precipitation 0.1 30 > th dose independent rect. 4 10
32 150.86 precipitation 0.1 30 > th dose dependent rect. 4 10
36 150.87 precipitation 0.1 90 > th dose dependent rect. 4 3
37 150.89 precipitation 0.1 90 > th dose independent rect. 4 3
38 150.90 precipitation 0.1 10 > th dose independent rect. 4 4
165 152.31 radiation 1.0 10 < th dose dependent rect. 6 1
216 154.91 precipitation 0.1 10 < th dose independent sin 0 NA
217 154.91 precipitation 0.1 10 < th dose dependent sin 0 NA
222 155.00 precipitation 0.1 10 > th dose independent sin 0 NA
223 155.00 precipitation 0.1 10 > th dose dependent sin 0 NA
224 155.02 wind 9.0 720 > th dose independent rect. 18 2
240 155.25 wind 9.0 720 > th dose dependent rect. 19 1
241 155.27 atmosphere 1015.0 10 < th dose independent rect. 21 23
245 155.35 wind 3.0 10 > th dose dependent rect. 2 5
247 155.39 wind 3.0 720 > th dose dependent rect. 19 1
257 155.52 wind 1.0 720 > th dose dependent rect. 18 3
278 156.23 wind 3.0 10 > th dose independent rect. 24 7
279 156.26 atmosphere 995.0 30 > th dose dependent rect. 17 13
288 156.42 atmosphere 995.0 90 > th dose dependent rect. 19 11
289 156.43 wind 3.0 10 > th dose dependent rect. 20 1
295 156.48 precipitation 0.1 90 > th dose independent rect. 2 4
299 156.49 precipitation 0.1 90 > th dose dependent rect. 2 4
305 156.52 wind 7.0 1440 > th dose dependent rect. 13 2
308 156.57 wind 3.0 10 > th dose independent rect. 20 11
309 156.58 temperature 30.0 10 < th dose independent rect. 21 23
310 156.59 wind 3.0 720 > th dose independent rect. 18 3
368 156.71 radiation 10.0 43200 < th dose dependent rect. 21 1
370 156.72 humidity 90.0 30 < th dose independent rect. 5 1
382 156.76 humidity 80.0 14400 < th dose dependent rect. 6 1
387 156.76 atmosphere 1000.0 10 > th dose dependent rect. 12 18
393 156.79 wind 5.0 720 < th dose independent rect. 20 5
399 156.84 wind 7.0 720 < th dose independent rect. 18 15
405 156.88 atmosphere 1000.0 30 > th dose independent rect. 21 23
413 156.92 radiation 1.0 10 < th dose independent rect. 6 6
416 156.93 wind 9.0 1440 > th dose independent rect. 13 2
418 156.93 wind 5.0 270 < th dose independent rect. 21 11
421 156.94 temperature 25.0 90 > th dose dependent rect. 19 2
424 156.95 humidity 90.0 10 < th dose dependent rect. 5 1
436 156.99 precipitation 0.1 90 > th dose independent rect. 24 6
445 157.00 precipitation 0.1 90 > th dose dependent rect. 24 7
457 157.08 wind 5.0 720 < th dose independent rect. 21 2
463 157.10 wind 1.0 43200 < th dose dependent rect. 5 17
468 157.13 humidity 80.0 14400 < th dose independent rect. 5 3
474 157.15 wind 3.0 10 > th dose independent rect. 20 1
487 157.19 temperature 25.0 10 > th dose dependent rect. 20 1
489 157.19 humidity 80.0 14400 < th dose dependent rect. 1 7
497 157.23 wind 7.0 720 < th dose independent rect. 13 20
503 157.24 wind 7.0 720 < th dose dependent rect. 21 2
511 157.26 humidity 90.0 10 < th dose independent rect. 20 1
512 157.26 wind 3.0 43200 > th dose independent rect. 1 2
527 157.28 humidity 90.0 30 < th dose dependent rect. 20 1
534 157.30 wind 5.0 270 > th dose independent rect. 19 11
537 157.30 wind 5.0 270 > th dose dependent rect. 22 8
553 157.34 precipitation 0.1 10 < th dose independent rect. 21 23
558 157.34 precipitation 0.1 10 < th dose dependent rect. 21 23
559 157.35 temperature 25.0 10 > th dose independent rect. 20 1
560 157.35 wind 3.0 43200 < th dose independent rect. 10 3
572 157.37 wind 1.0 43200 < th dose independent rect. 3 21
575 157.38 wind 3.0 43200 < th dose independent rect. 1 1
579 157.38 wind 9.0 720 < th dose dependent rect. 19 6
582 157.39 wind 9.0 30 < th dose independent rect. 21 23
603 157.42 atmosphere 995.0 720 > th dose dependent rect. 17 4
606 157.43 wind 9.0 1440 < th dose independent rect. 13 2
613 157.44 atmosphere 1015.0 10 < th dose independent rect. 13 23
615 157.44 atmosphere 1005.0 30 > th dose dependent rect. 20 1
617 157.45 wind 7.0 270 > th dose independent rect. 22 7
633 157.47 wind 9.0 30 < th dose independent rect. 20 1
634 157.47 temperature 10.0 30 > th dose independent rect. 20 1
636 157.47 temperature 10.0 1440 > th dose independent rect. 21 1
639 157.47 temperature 30.0 30 < th dose independent rect. 20 1
640 157.47 temperature 30.0 1440 < th dose independent rect. 21 1
644 157.47 humidity 50.0 30 > th dose independent rect. 20 1
647 157.47 humidity 50.0 1440 > th dose independent rect. 21 1
653 157.47 atmosphere 995.0 30 > th dose independent rect. 20 1
654 157.47 atmosphere 995.0 1440 > th dose independent rect. 21 1
655 157.47 atmosphere 1010.0 30 < th dose independent rect. 20 1
657 157.47 radiation 1.0 30 < th dose independent rect. 20 1
662 157.47 radiation 1.0 1440 < th dose independent rect. 21 1
682 157.47 precipitation 0.1 30 < th dose independent rect. 20 1
684 157.47 temperature 10.0 30 > th dose independent rect. 21 23
685 157.47 temperature 10.0 1440 > th dose independent rect. 22 23
688 157.47 atmosphere 995.0 30 > th dose dependent rect. 20 1
690 157.47 radiation 1.0 30 < th dose dependent rect. 20 1
695 157.47 precipitation 0.1 30 < th dose dependent rect. 20 1
713 157.50 atmosphere 1015.0 30 < th dose dependent rect. 20 1
719 157.51 wind 1.0 43200 > th dose independent rect. 3 20
720 157.51 wind 1.0 43200 < th dose dependent sin 0 NA
731 157.53 humidity 80.0 14400 > th dose independent rect. 6 1
738 157.54 humidity 50.0 30 > th dose dependent rect. 20 1
743 157.55 wind 7.0 270 > th dose dependent rect. 2 1
749 157.56 radiation 10.0 43200 > th dose independent rect. 15 1
755 157.57 wind 7.0 270 > th dose independent rect. 2 1
760 157.57 temperature 25.0 30 > th dose dependent rect. 19 11
768 157.58 temperature 25.0 30 > th dose dependent rect. 19 9
772 157.59 atmosphere 1015.0 270 < th dose independent rect. 21 12
775 157.60 wind 3.0 43200 > th dose independent rect. 23 4
835 157.62 wind 5.0 30 < th dose independent rect. 20 1
845 157.62 wind 3.0 270 > th dose dependent rect. 19 11
851 157.63 wind 9.0 30 < th dose dependent rect. 20 1
853 157.63 temperature 25.0 30 > th dose dependent rect. 19 7
892 157.70 wind 1.0 43200 < th dose independent rect. 5 16
910 157.72 wind 9.0 720 < th dose dependent rect. 13 12
943 157.73 atmosphere 995.0 720 > th dose dependent rect. 9 12
946 157.74 humidity 80.0 14400 > th dose independent rect. 4 4
950 157.74 humidity 80.0 14400 > th dose independent rect. 1 7
971 157.76 atmosphere 1005.0 270 > th dose independent rect. 8 22
989 157.77 wind 9.0 720 < th dose dependent rect. 12 14
991 157.78 precipitation 0.1 90 < th dose independent sin 5 NA
995 157.78 precipitation 0.1 90 < th dose dependent sin 5 NA