Os01g0815800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L24-A (L30A) (RP29) (YL21).
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Os01g0815800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L24-A (L30A) (RP29) (YL21).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.84 | 0.398 | 12.9 | -0.295 | 0.748 | 0.619 | 0.731 | -1.53 | -0.223 | 17.4 | 19.8 | 2776 | -- | -- |
| 75.1 | 0.404 | 12.8 | -0.0354 | 0.744 | 0.964 | 0.771 | -- | -0.159 | 17.2 | 19.39 | 2749 | -- | -- |
| 73.11 | 0.398 | 12.9 | -0.308 | 0.755 | 0.611 | -- | -1.6 | -0.22 | 17.3 | 19.81 | 2747 | -- | -- |
| 76.57 | 0.408 | 12.8 | -0.0783 | 0.758 | 1.04 | -- | -- | -0.166 | 17.3 | 19 | 2741 | -- | -- |
| 102.49 | 0.472 | 12.9 | -0.298 | -- | 0.571 | -- | -1.59 | -0.222 | -- | 19.74 | 2890 | -- | -- |
| 90.62 | 0.446 | 12.8 | 0.423 | 0.716 | -- | 0.968 | -- | 0.0475 | 17.5 | -- | -- | -- | -- |
| 92.93 | 0.451 | 12.8 | 0.42 | 0.721 | -- | -- | -- | 0.0518 | 17.4 | -- | -- | -- | -- |
| 105.36 | 0.478 | 12.8 | 0.00466 | -- | 0.94 | -- | -- | -0.163 | -- | 19.7 | 1792 | -- | -- |
| 76.71 | 0.408 | 12.8 | -- | 0.738 | 0.994 | -- | -- | -0.143 | 17.3 | 19 | 2740 | -- | -- |
| 120.03 | 0.512 | 12.8 | 0.396 | -- | -- | -- | -- | 0.0341 | -- | -- | -- | -- | -- |
| 97.59 | 0.462 | 12.8 | -- | 0.714 | -- | -- | -- | 0.00501 | 17.5 | -- | -- | -- | -- |
| 105.33 | 0.478 | 12.8 | -- | -- | 0.952 | -- | -- | -0.148 | -- | 19.68 | 1790 | -- | -- |
| 124.17 | 0.52 | 12.8 | -- | -- | -- | -- | -- | -0.00984 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 2 | 70.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 6 | 71.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 7 | 71.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 9 | 71.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 41 | 71.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 52 | 71.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 63 | 71.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 68 | 71.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 71 | 71.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 79 | 72.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 90 | 72.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 91 | 72.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 123 | 72.25 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 135 | 72.32 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 171 | 72.50 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 175 | 72.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 198 | 72.61 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 205 | 72.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 301 | 72.89 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 346 | 73.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 371 | 73.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 407 | 73.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 416 | 73.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 22 |
| 417 | 73.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 421 | 73.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 434 | 73.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 460 | 73.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 472 | 73.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 507 | 73.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 545 | 73.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 550 | 73.36 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 554 | 73.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 555 | 73.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 581 | 73.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 606 | 73.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 634 | 73.45 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 656 | 73.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 663 | 73.48 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 673 | 73.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 697 | 73.50 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 698 | 73.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 734 | 73.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 754 | 73.55 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 761 | 73.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 783 | 73.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 840 | 73.61 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 857 | 73.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 876 | 73.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 901 | 73.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 905 | 73.65 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 970 | 73.70 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |