BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0815800 Os01g0815800|AK101927
(162 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53020.1 | chr3:19660749-19661912 REVERSE LENGTH=164 218 1e-57
AT2G36620.1 | chr2:15350548-15351819 REVERSE LENGTH=165 218 2e-57
AT2G44860.1 | chr2:18501034-18502128 REVERSE LENGTH=160 70 4e-13
>AT3G53020.1 | chr3:19660749-19661912 REVERSE LENGTH=164
Length = 163
Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/115 (89%), Positives = 109/115 (94%)
Query: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
MVLKTELCRFSGQKIYPG+GIRFIR+DSQVFLF NSKCKRYFHN+LKP+KL WTAMYRKQ
Sbjct: 1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60
Query: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 115
HKKD EAVK+RRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct: 61 HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115
>AT2G36620.1 | chr2:15350548-15351819 REVERSE LENGTH=165
Length = 164
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/115 (89%), Positives = 109/115 (94%)
Query: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
MVLKTELCRFSGQKIYPG+GIRFIR+DSQVFLF NSKCKRYFHN+LKP+KL WTAMYRKQ
Sbjct: 1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60
Query: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 115
HKKD EAVK+RRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct: 61 HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115
>AT2G44860.1 | chr2:18501034-18502128 REVERSE LENGTH=160
Length = 159
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
++ E C F IYPG GI+F+R D+++F F SKC + F + P K+ WT +R H
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 63 KDIHAEAV----KKRRRTTKKPYSRSIVGATLEVIQK 95
KD+ + KKR R + Y R++ TL I+K
Sbjct: 61 KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK 95
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,444,823
Number of extensions: 81013
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)