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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0812600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NSF attachment protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0155) R2 : 3.35e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00404 (0.0327) R2dN8 : 4.33e-05 R2N8 : 3.35e-05
σ : 0.292
deviance : 39.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.23 0.287 2.84 0.0445 0.455 -0.357 -1.34 1.17 0.0237 13.3 1.373 264 -- --
38.04 0.287 2.84 -0.0577 0.3 -0.209 -0.146 -- 0.00258 12.8 1.295 243 -- --
38.58 0.292 2.85 -0.0302 0.108 -0.0526 -- -0.0237 0.000991 10.4 29.87 456 -- --
37.92 0.287 2.85 -0.0171 0.358 -0.269 -- -- -0.00395 13.1 1.009 248 -- --
38.75 0.29 2.85 -0.00819 -- -0.098 -- 0.0425 0.0231 -- 22.31 1017 -- --
38.61 0.291 2.85 -0.028 0.0866 -- -0.154 -- 0.000372 9.76 -- -- -- --
38.7 0.291 2.85 -0.0338 0.0873 -- -- -- 0.000126 9.81 -- -- -- --
38.75 0.29 2.85 -0.0126 -- -0.0983 -- -- 0.0202 -- 22.29 1017 -- --
37.9 0.287 2.86 -- 0.409 -0.311 -- -- -0.00457 13.2 0.9938 257 -- --
39.15 0.292 2.85 -0.0347 -- -- -- -- 0.000187 -- -- -- -- --
38.73 0.291 2.85 -- 0.0874 -- -- -- 0.00389 9.84 -- -- -- --
38.76 0.29 2.85 -- -- -0.0995 -- -- 0.0194 -- 22.29 1017 -- --
39.18 0.292 2.85 -- -- -- -- -- 0.00404 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.70 radiation 1.0 10 < th dose independent rect. 13 1
11 32.70 radiation 1.0 10 < th dose dependent rect. 13 1
21 32.81 humidity 80.0 90 > th dose dependent rect. 12 1
24 32.85 humidity 80.0 90 > th dose independent rect. 12 1
49 33.33 radiation 1.0 10 < th dose independent rect. 6 8
61 33.73 radiation 1.0 10 < th dose dependent rect. 6 8
76 34.41 radiation 1.0 90 < th dose independent rect. 5 9
77 34.43 humidity 80.0 10 > th dose independent rect. 14 1
99 34.59 radiation 1.0 90 < th dose dependent rect. 5 9
120 35.23 radiation 1.0 10 < th dose independent rect. 5 2
155 35.80 wind 1.0 90 > th dose dependent rect. 5 1
171 35.92 radiation 20.0 10 < th dose independent rect. 14 1
196 36.18 radiation 1.0 10 < th dose dependent rect. 5 2
200 36.25 wind 3.0 90 > th dose independent rect. 5 1
208 36.29 wind 1.0 10 > th dose dependent rect. 5 1
209 36.31 wind 5.0 10 > th dose independent rect. 13 2
211 36.32 humidity 60.0 10 > th dose dependent rect. 14 1
233 36.42 radiation 20.0 90 < th dose independent rect. 12 1
234 36.42 radiation 1.0 720 < th dose independent rect. 3 3
236 36.44 radiation 40.0 10 < th dose dependent rect. 14 1
237 36.44 wind 9.0 720 < th dose dependent rect. 22 5
247 36.48 wind 1.0 720 > th dose dependent rect. 3 1
249 36.49 temperature 25.0 10 < th dose independent rect. 13 1
261 36.50 wind 1.0 720 > th dose independent rect. 3 2
269 36.51 wind 5.0 720 < th dose independent rect. 23 3
277 36.52 temperature 25.0 720 < th dose independent rect. 3 2
294 36.56 humidity 90.0 10 > th dose independent rect. 5 1
295 36.56 wind 3.0 270 > th dose independent rect. 2 5
304 36.58 radiation 1.0 270 < th dose independent rect. 18 20
313 36.59 wind 5.0 90 > th dose dependent rect. 4 5
317 36.60 temperature 30.0 90 > th dose independent rect. 11 3
318 36.60 humidity 50.0 90 > th dose independent rect. 3 12
334 36.63 wind 7.0 90 > th dose independent rect. 4 5
356 36.67 wind 5.0 90 > th dose independent rect. 13 2
369 36.68 radiation 1.0 720 < th dose independent rect. 19 11
370 36.68 wind 1.0 270 > th dose independent rect. 2 12
394 36.73 wind 1.0 1440 < th dose dependent rect. 23 1
397 36.74 atmosphere 1005.0 30 > th dose independent rect. 13 2
402 36.74 wind 7.0 720 < th dose independent rect. 23 10
417 36.75 humidity 50.0 720 > th dose independent rect. 3 10
432 36.77 wind 1.0 720 > th dose independent rect. 18 20
440 36.79 humidity 80.0 10 > th dose dependent rect. 5 2
445 36.80 wind 1.0 30 > th dose independent rect. 13 18
455 36.81 wind 9.0 720 < th dose dependent rect. 23 10
456 36.82 radiation 40.0 30 < th dose independent rect. 13 2
468 36.84 humidity 50.0 10 > th dose independent rect. 5 10
476 36.85 temperature 30.0 90 < th dose independent rect. 23 13
479 36.85 humidity 50.0 10 > th dose dependent rect. 5 10
482 36.87 wind 1.0 720 > th dose independent rect. 18 12
493 36.88 temperature 30.0 90 < th dose independent rect. 6 23
505 36.90 temperature 20.0 10 > th dose independent rect. 14 1
506 36.90 humidity 60.0 10 > th dose independent rect. 14 1
509 36.90 wind 1.0 10 > th dose dependent rect. 14 1
514 36.91 humidity 50.0 720 > th dose independent rect. 18 20
515 36.91 temperature 30.0 30 < th dose independent rect. 15 22
524 36.92 wind 5.0 10 > th dose independent rect. 10 1
528 36.92 wind 7.0 10 < th dose independent rect. 14 1
531 36.92 wind 5.0 10 > th dose dependent rect. 10 1
542 36.93 radiation 1.0 270 < th dose independent rect. 10 21
549 36.94 radiation 20.0 10 < th dose independent rect. 12 3
550 36.94 temperature 30.0 30 < th dose independent rect. 7 6
556 36.95 temperature 25.0 30 < th dose independent rect. 6 1
559 36.95 radiation 1.0 90 > th dose independent rect. 15 22
561 36.95 wind 7.0 90 > th dose dependent rect. 8 1
564 36.95 wind 3.0 1440 < th dose dependent rect. 23 6
569 36.96 radiation 40.0 10 < th dose independent rect. 5 10
577 36.97 temperature 30.0 270 > th dose independent rect. 11 1
578 36.97 humidity 90.0 10 < th dose independent rect. 14 1
591 36.98 wind 7.0 90 > th dose independent rect. 8 1
594 36.98 temperature 10.0 10 > th dose independent rect. 14 1
599 36.98 atmosphere 1010.0 10 < th dose independent rect. 14 1
601 36.98 radiation 1.0 10 > th dose independent rect. 14 1
603 36.98 precipitation 0.1 10 < th dose independent rect. 14 1
623 36.98 temperature 10.0 10 > th dose independent rect. 15 23
624 36.98 precipitation 0.1 10 < th dose dependent rect. 14 1
632 36.99 humidity 90.0 90 > th dose independent rect. 5 1
643 37.00 humidity 90.0 90 > th dose independent rect. 8 2
644 37.00 precipitation 0.1 30 > th dose independent rect. 4 4
661 37.00 temperature 30.0 30 < th dose dependent rect. 14 1
664 37.00 precipitation 0.1 30 > th dose dependent rect. 5 9
669 37.01 precipitation 0.1 90 > th dose independent rect. 5 1
707 37.01 precipitation 0.1 90 > th dose dependent rect. 5 1
715 37.01 precipitation 0.1 10 > th dose dependent rect. 5 3
774 37.02 atmosphere 1015.0 10 < th dose dependent rect. 14 1
796 37.03 atmosphere 995.0 10 > th dose dependent rect. 14 1
797 37.03 wind 1.0 90 > th dose dependent rect. 13 2
798 37.03 radiation 1.0 720 < th dose dependent rect. 3 3
808 37.04 wind 1.0 720 > th dose independent rect. 15 3
809 37.04 temperature 25.0 90 < th dose independent rect. 4 3
810 37.04 humidity 50.0 1440 > th dose independent rect. 5 5
813 37.04 wind 1.0 720 > th dose independent rect. 11 19
823 37.04 radiation 30.0 720 < th dose dependent rect. 3 3
834 37.04 radiation 40.0 10 < th dose dependent rect. 15 14
843 37.05 temperature 30.0 10 < th dose dependent rect. 5 2
844 37.05 humidity 90.0 90 > th dose dependent rect. 8 2
856 37.06 temperature 10.0 720 > th dose independent rect. 15 3
857 37.06 humidity 80.0 720 > th dose independent rect. 3 3
858 37.06 atmosphere 1015.0 720 < th dose independent rect. 15 3
860 37.06 wind 1.0 1440 < th dose independent rect. 22 7
865 37.06 temperature 10.0 720 > th dose independent rect. 18 21
867 37.06 radiation 1.0 270 < th dose independent rect. 1 23
879 37.07 temperature 30.0 90 > th dose independent sin 6 NA
881 37.07 wind 9.0 720 < th dose independent rect. 3 3
882 37.07 temperature 10.0 720 > th dose independent rect. 3 3
884 37.07 humidity 50.0 720 > th dose independent rect. 3 3
887 37.07 atmosphere 995.0 720 > th dose independent rect. 3 3
888 37.07 radiation 20.0 720 < th dose independent rect. 3 3
895 37.07 temperature 10.0 720 > th dose independent rect. 6 21
896 37.07 atmosphere 995.0 720 > th dose independent rect. 18 21
897 37.07 precipitation 0.1 720 < th dose independent rect. 6 21
904 37.07 precipitation 0.1 720 < th dose dependent rect. 6 21
907 37.08 precipitation 0.1 720 < th dose independent rect. 15 3
912 37.08 temperature 30.0 10 > th dose dependent rect. 11 1
917 37.08 radiation 40.0 10 < th dose dependent rect. 12 3
918 37.08 precipitation 0.1 720 < th dose dependent rect. 15 3
922 37.08 wind 3.0 1440 < th dose dependent rect. 22 14
936 37.09 wind 5.0 1440 < th dose dependent sin 10 NA
968 37.10 radiation 20.0 90 < th dose independent rect. 4 10
969 37.10 wind 9.0 90 < th dose independent rect. 4 11
973 37.10 temperature 10.0 10 > th dose dependent rect. 14 1
994 37.11 radiation 1.0 90 < th dose independent sin 1 NA
998 37.11 wind 1.0 720 > th dose independent rect. 18 5