Os01g0808900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SigA binding protein.
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Os01g0808900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SigA binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.91 | 0.512 | 9.49 | -2.63 | 1.45 | 0.624 | 0.179 | 0.0218 | -0.346 | 7.23 | 1015 | 5866 | -- | -- |
| 118.91 | 0.508 | 9.49 | -2.64 | 1.45 | 0.622 | 0.181 | -- | -0.347 | 7.23 | 1015 | 5869 | -- | -- |
| 119 | 0.508 | 9.49 | -2.63 | 1.45 | 0.622 | -- | 0.0296 | -0.346 | 7.23 | 1015 | 5867 | -- | -- |
| 119 | 0.508 | 9.49 | -2.63 | 1.45 | 0.621 | -- | -- | -0.347 | 7.23 | 1015 | 5865 | -- | -- |
| 230.46 | 0.707 | 9.53 | -2.55 | -- | 0.598 | -- | -0.0714 | -0.329 | -- | 1015 | 5759 | -- | -- |
| 131.79 | 0.538 | 9.46 | -2.44 | 1.46 | -- | 0.11 | -- | -0.225 | 7.22 | -- | -- | -- | -- |
| 131.83 | 0.538 | 9.46 | -2.43 | 1.46 | -- | -- | -- | -0.225 | 7.22 | -- | -- | -- | -- |
| 230.56 | 0.707 | 9.52 | -2.54 | -- | 0.598 | -- | -- | -0.319 | -- | 1015 | 5757 | -- | -- |
| 204.23 | 0.666 | 9.39 | -- | 1.4 | -1.44 | -- | -- | 0.412 | 7.59 | 1016 | 47520 | -- | -- |
| 245.34 | 0.732 | 9.5 | -2.41 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 287.95 | 0.794 | 9.4 | -- | 1.44 | -- | -- | -- | 0.0463 | 7.33 | -- | -- | -- | -- |
| 312.8 | 0.824 | 9.36 | -- | -- | -1.46 | -- | -- | 0.419 | -- | 1016 | 47520 | -- | -- |
| 398.21 | 0.931 | 9.44 | -- | -- | -- | -- | -- | 0.0676 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 2 | 112.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 3 | 112.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 7 | 113.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 15 | 113.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 16 | 113.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 19 | 114.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 21 | 114.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 25 | 114.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 27 | 114.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 42 | 114.62 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 48 | 114.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 58 | 115.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 66 | 115.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 78 | 115.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 81 | 115.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 85 | 115.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 87 | 115.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 99 | 115.73 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 17 | 11 |
| 148 | 116.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 155 | 116.43 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 166 | 116.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 212 | 117.00 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 20 | 10 |
| 217 | 117.07 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 16 |
| 240 | 117.28 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 256 | 117.54 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 267 | 117.59 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 12 |
| 298 | 117.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 301 | 117.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 303 | 117.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 305 | 117.87 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 359 | 117.87 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 361 | 117.87 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 363 | 117.87 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 376 | 117.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 439 | 118.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 9 |
| 471 | 118.23 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 480 | 118.33 | atmosphere | 1005 | 270 | > th | dose independent | sin | 14 | NA |
| 501 | 118.41 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 503 | 118.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 513 | 118.62 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 517 | 118.67 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 22 | 8 |
| 532 | 118.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 558 | 118.85 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 559 | 118.85 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 589 | 118.99 | atmosphere | 1005 | 270 | < th | dose independent | sin | 14 | NA |
| 595 | 119.04 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 596 | 119.04 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 597 | 119.05 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 608 | 119.09 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 621 | 119.17 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 638 | 119.29 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 644 | 119.33 | humidity | 60 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 650 | 119.38 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 18 | 1 |
| 652 | 119.39 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 657 | 119.41 | radiation | 10 | 30 | > th | dose independent | rect. | 11 | 7 |
| 704 | 119.49 | humidity | 70 | 1440 | < th | dose independent | sin | 8 | NA |
| 712 | 119.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 714 | 119.55 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 721 | 119.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 725 | 119.58 | radiation | 10 | 10 | > th | dose independent | sin | 19 | NA |
| 735 | 119.61 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 15 | 9 |
| 797 | 119.82 | humidity | 60 | 4320 | < th | dose dependent | rect. | 18 | 19 |
| 798 | 119.83 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 807 | 119.86 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 856 | 119.96 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 884 | 120.02 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 16 | 5 |
| 954 | 120.14 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 956 | 120.14 | humidity | 60 | 4320 | < th | dose dependent | sin | 8 | NA |