Os01g0805800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb5, N-terminal domain containing protein.
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Os01g0805800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase Rpb5, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.01 | 0.249 | 10.4 | -1.89 | 0.433 | -1.79 | 0.177 | -0.471 | -0.145 | 19.9 | 19.5 | 6225 | -- | -- |
| 28.07 | 0.247 | 10.4 | -1.87 | 0.447 | -1.59 | 0.203 | -- | -0.148 | 19.8 | 19.44 | 6224 | -- | -- |
| 28.08 | 0.247 | 10.4 | -1.89 | 0.434 | -1.8 | -- | -0.489 | -0.137 | 19.9 | 19.3 | 6186 | -- | -- |
| 28.05 | 0.247 | 10.4 | -1.9 | 0.448 | -1.59 | -- | -- | -0.139 | 19.8 | 19.49 | 7123 | -- | -- |
| 38.13 | 0.288 | 10.4 | -1.92 | -- | -1.98 | -- | -0.856 | -0.145 | -- | 19.34 | 6427 | -- | -- |
| 46.81 | 0.321 | 10.4 | -1.22 | 0.439 | -- | 0.172 | -- | 0.0718 | 20 | -- | -- | -- | -- |
| 46.9 | 0.321 | 10.4 | -1.23 | 0.438 | -- | -- | -- | 0.0719 | 20 | -- | -- | -- | -- |
| 38.26 | 0.288 | 10.4 | -1.96 | -- | -1.57 | -- | -- | -0.164 | -- | 19.67 | 7893 | -- | -- |
| 83.22 | 0.427 | 10.3 | -- | 0.472 | -0.51 | -- | -- | 0.155 | 20.4 | 22.9 | 40 | -- | -- |
| 57.39 | 0.354 | 10.3 | -1.23 | -- | -- | -- | -- | 0.0663 | -- | -- | -- | -- | -- |
| 86.65 | 0.435 | 10.3 | -- | 0.447 | -- | -- | -- | 0.209 | 19.8 | -- | -- | -- | -- |
| 92.85 | 0.449 | 10.3 | -- | -- | -0.496 | -- | -- | 0.111 | -- | 27.8 | 409 | -- | -- |
| 97.46 | 0.461 | 10.3 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.79 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 2 | 27.81 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 7 | 27.85 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 12 | 27.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 13 | 27.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 21 | 27.92 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 23 | 27.93 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 68 | 28.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 69 | 28.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 87 | 28.14 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 106 | 28.19 | humidity | 50.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 115 | 28.25 | humidity | 50.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 125 | 28.28 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 140 | 28.30 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 152 | 28.33 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 153 | 28.33 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 157 | 28.33 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 186 | 28.34 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 217 | 28.34 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 221 | 28.35 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 237 | 28.36 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 249 | 28.38 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 263 | 28.39 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 266 | 28.39 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 274 | 28.40 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 275 | 28.40 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 282 | 28.41 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 294 | 28.42 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 305 | 28.43 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 333 | 28.47 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 334 | 28.47 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 387 | 28.50 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 532 | 28.67 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 534 | 28.68 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 540 | 28.68 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 570 | 28.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 630 | 28.78 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 695 | 28.84 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 8 |
| 704 | 28.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 712 | 28.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 742 | 28.87 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 745 | 28.88 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 771 | 28.90 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 776 | 28.90 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 19 | 15 |
| 818 | 28.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 822 | 28.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 986 | 29.00 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 14 |