BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0805800 Os01g0805800|AK103408
(210 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22320.1 | chr3:7891045-7892094 REVERSE LENGTH=206 300 5e-82
AT5G57980.1 | chr5:23469050-23469768 REVERSE LENGTH=211 181 2e-46
AT2G41340.1 | chr2:17229026-17230442 FORWARD LENGTH=219 134 4e-32
AT3G57080.1 | chr3:21125878-21127470 FORWARD LENGTH=223 134 5e-32
AT3G54490.1 | chr3:20173673-20175297 FORWARD LENGTH=234 118 2e-27
AT3G16680.1 | chr3:5683697-5684130 FORWARD LENGTH=88 82 2e-16
>AT3G22320.1 | chr3:7891045-7892094 REVERSE LENGTH=206
Length = 205
Score = 300 bits (767), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/206 (68%), Positives = 176/206 (85%), Gaps = 1/206 (0%)
Query: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
++TEE + RL RI++T+MQMLRDRGY + + EL M ++ F+RK+G++ REDL+ K K
Sbjct: 1 MLTEEEL-KRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAK 59
Query: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124
+ND SDQ+Y+FFP++ KVG+K +K Y MK+ENV RA+LV+QQNLTPFAR+ + E+ K
Sbjct: 60 RNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 119
Query: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYG 184
HLE+FQEAE+L+NIKEHVLVPEHQVL EEKKTLLERYT+KETQLPRIQ+TDPIARY+G
Sbjct: 120 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 179
Query: 185 LRRGQVVKIIRPSETAGRYVTYRYVV 210
L+RGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 180 LKRGQVVKIIRPSETAGRYVTYRYVV 205
>AT5G57980.1 | chr5:23469050-23469768 REVERSE LENGTH=211
Length = 210
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 142/203 (69%), Gaps = 4/203 (1%)
Query: 12 VGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHR---EDLLINKYKKNDP 68
+ R+ ++RRTV+QMLRDRGY + E +L + R +F++++ ++ ++ E L ++ K +P
Sbjct: 8 ITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPNP 67
Query: 69 SDQIYVFFPNDDKVGMKHIKKYVEM-MKAENVSRAVLVLQQNLTPFARSFLQELEPKIHL 127
+D+IYVF+P KVG+ IKK V + M+ + V R ++V+ +T AR + EL + +
Sbjct: 68 ADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTI 127
Query: 128 EIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRR 187
E+F+EAEL+ NI EH LV ++ VL+++ KK LL YT+++TQLPRI +TDP+ARYYGL+R
Sbjct: 128 EVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKR 187
Query: 188 GQVVKIIRPSETAGRYVTYRYVV 210
GQVVKI R T+ Y TYR+ V
Sbjct: 188 GQVVKIRRSDATSLDYYTYRFAV 210
>AT2G41340.1 | chr2:17229026-17230442 FORWARD LENGTH=219
Length = 218
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 120/192 (62%), Gaps = 3/192 (1%)
Query: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
RRT M+MLRDRGY V + ++ + + F YGE + L I+ + D S +I V F
Sbjct: 28 RRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCG 87
Query: 79 DDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
V + ++ +++ EN++ +LVLQ ++T A ++ K+ E+F+ +LL+
Sbjct: 88 TGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKV--ELFEITDLLV 145
Query: 138 NIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPS 197
N+ +HVL P+HQVLN++EK++LL++++++E QLPR+ DPI RYYGL GQV+K+
Sbjct: 146 NVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKD 205
Query: 198 ETAGRYVTYRYV 209
E + +VTYR V
Sbjct: 206 ELSESHVTYRCV 217
>AT3G57080.1 | chr3:21125878-21127470 FORWARD LENGTH=223
Length = 222
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
RR +QMLRDRGY V + ++ + DF YGE + L I+ ++D + ++ + F
Sbjct: 32 RRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDSTKKVKIVFFG 91
Query: 79 DDKVGMKHIKKYV-EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
V + I+ V +++ E ++ +LVLQ ++T A ++ K+ EIFQ +LL+
Sbjct: 92 TSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKV--EIFQITDLLV 149
Query: 138 NIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPS 197
NI +H L P+HQVLN+EEK TLL++++++E QLPRI D I RYYGL +GQVVK+
Sbjct: 150 NITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRG 209
Query: 198 ETAGRYVTYRYV 209
E +V +R V
Sbjct: 210 ELTESHVAFRCV 221
>AT3G54490.1 | chr3:20173673-20175297 FORWARD LENGTH=234
Length = 233
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIY 73
R R T +MLRDRGY V E EL++ +F +GE E L I ++DP +I
Sbjct: 38 RFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKIL 97
Query: 74 VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132
V F + + +K ++ ++++ + +LVLQ + FA+ L +E F
Sbjct: 98 VVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--PFTVETFPI 155
Query: 133 AELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
+LL+NI +H+ P+ ++LN EEK+ LL ++ L++ QLP +Q D RYYGL++ QVVK
Sbjct: 156 EDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVK 215
Query: 193 IIRPSETAGRYVTYRYVV 210
I E G +VTYR ++
Sbjct: 216 ITYSKEPVGDFVTYRCII 233
>AT3G16680.1 | chr3:5683697-5684130 FORWARD LENGTH=88
Length = 87
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Query: 87 IKKYVEMMKAENVSRAVLVLQQNLTPFARS---FLQELEPKIHLEIFQEAELLINIKEHV 143
+KKY++ +K+ NV RA+LV+Q ++ F+R FL + P H+E+FQE EL++N+KEHV
Sbjct: 1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 144 LVPEHQVLNNEEKKTLLER 162
VPEHQ L EEK+ LER
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,238,345
Number of extensions: 172403
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 6
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)