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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0802400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, BED-type predicted domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0387) R2 : 0.161
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.953 (0.127) R2dC : 0.166 R2C : -0.0715
β3 : -0.92 (0.105) R2dE : 0.244 R2E : -0.00732
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.115 (0.0866) R2dN8 : 0.00482 R2N8 : -0.0152
σ : 0.72
deviance : 239.3
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_____
C
peak time of C : 18.4
E
wheather : temperature
threshold : 25.81
memory length : 296
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.24 0.718 3.66 0.375 0.991 -0.98 0.811 -0.299 0.19 18.4 25.8 294 -- --
233.27 0.711 3.66 0.445 1.02 -1.01 0.665 -- 0.194 18.4 25.85 300 -- --
234.4 0.713 3.66 0.446 1.02 -1 -- 0.0333 0.191 18.4 25.82 301 -- --
234.4 0.713 3.66 0.444 1.03 -1.01 -- -- 0.192 18.4 25.83 305 -- --
258.88 0.749 3.67 0.294 -- -0.489 -- -0.233 0.024 -- 24.4 118 -- --
273.02 0.775 3.72 0.179 0.369 -- 0.632 -- -0.144 21.5 -- -- -- --
274.48 0.776 3.72 0.156 0.368 -- -- -- -0.144 21.4 -- -- -- --
258.63 0.749 3.65 0.318 -- -0.558 -- -- 0.142 -- 24.5 114 -- --
239.3 0.72 3.67 -- 0.953 -0.92 -- -- 0.115 18.4 25.81 296 -- --
282.39 0.785 3.71 0.158 -- -- -- -- -0.146 -- -- -- -- --
275.12 0.776 3.72 -- 0.368 -- -- -- -0.162 21.4 -- -- -- --
261.31 0.753 3.65 -- -- -0.523 -- -- 0.103 -- 24.4 114 -- --
283.04 0.785 3.71 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.37 temperature 25 270 > th dose independent rect. 1 21
14 236.10 temperature 25 270 < th dose independent rect. 24 22
17 236.17 temperature 25 720 < th dose independent rect. 24 19
24 236.59 temperature 25 270 < th dose independent rect. 6 23
29 237.00 temperature 25 720 > th dose independent rect. 1 15
32 237.10 temperature 25 270 > th dose independent rect. 9 23
42 237.55 temperature 25 720 > th dose independent sin 2 NA
48 237.64 temperature 20 270 > th dose dependent rect. 5 18
50 237.67 temperature 15 720 > th dose dependent rect. 4 12
58 237.85 temperature 20 720 > th dose dependent rect. 2 14
66 238.05 temperature 25 720 < th dose independent sin 2 NA
70 238.07 temperature 25 270 > th dose independent no NA NA
81 238.24 temperature 10 720 > th dose dependent rect. 2 14
105 238.57 temperature 20 90 > th dose dependent rect. 5 22
109 238.60 temperature 25 270 < th dose independent no NA NA
110 238.62 temperature 25 270 < th dose independent sin 22 NA
125 238.78 temperature 25 270 > th dose independent sin 22 NA
126 238.78 temperature 25 270 > th dose independent rect. 17 23
128 238.82 temperature 25 270 < th dose independent rect. 8 12
130 238.85 temperature 25 720 < th dose independent rect. 6 13
157 239.09 temperature 30 720 < th dose dependent rect. 7 10
163 239.16 temperature 30 720 < th dose dependent rect. 6 12
164 239.16 temperature 30 270 < th dose dependent rect. 8 12
188 239.32 temperature 30 720 < th dose dependent sin 1 NA
208 239.42 temperature 25 270 < th dose independent rect. 17 23
217 239.47 temperature 25 270 > th dose independent rect. 9 13
228 239.54 temperature 25 270 < th dose independent rect. 15 23
240 239.61 temperature 30 270 < th dose dependent sin 22 NA
248 239.67 temperature 30 720 < th dose dependent rect. 3 15
276 239.88 temperature 20 30 > th dose dependent rect. 1 23
301 240.04 temperature 25 270 < th dose independent rect. 10 23
320 240.14 temperature 20 720 > th dose dependent rect. 9 7
358 240.34 temperature 20 720 > th dose dependent sin 2 NA
404 240.58 temperature 20 270 > th dose dependent rect. 17 23
595 241.55 temperature 20 10 > th dose dependent rect. 5 23
656 241.79 temperature 25 1440 < th dose independent rect. 7 21
663 241.82 temperature 30 270 < th dose dependent rect. 24 22
666 241.83 temperature 20 10 > th dose dependent rect. 6 21
668 241.84 temperature 25 1440 < th dose independent rect. 7 23
695 241.94 temperature 25 4320 < th dose independent rect. 16 12
743 242.08 temperature 25 1440 < th dose independent rect. 19 23
774 242.17 temperature 25 1440 > th dose independent rect. 7 21
782 242.19 temperature 25 1440 < th dose independent rect. 10 23
791 242.21 temperature 25 1440 < th dose independent rect. 5 23
826 242.28 temperature 25 4320 < th dose independent rect. 19 8
830 242.29 temperature 25 1440 < th dose independent no NA NA
838 242.30 temperature 30 270 < th dose dependent rect. 6 23
856 242.34 temperature 20 720 > th dose dependent rect. 11 2
862 242.36 temperature 30 10 < th dose dependent sin 20 NA
882 242.41 temperature 25 1440 > th dose independent rect. 10 18
896 242.45 temperature 25 1440 > th dose independent rect. 10 11
953 242.58 temperature 25 1440 > th dose independent rect. 10 23
954 242.58 temperature 25 1440 < th dose independent rect. 13 23
978 242.65 temperature 25 1440 > th dose independent rect. 5 23
983 242.66 temperature 25 1440 < th dose independent rect. 10 11
991 242.69 temperature 25 4320 < th dose independent rect. 19 2