Os01g0796500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily phosphatase subfamily IIIA domain containing protein.
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Os01g0796500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily phosphatase subfamily IIIA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.68 | 0.354 | 11.3 | -0.86 | 0.279 | 0.516 | -0.545 | 0.795 | -0.681 | 14.8 | 25.8 | 307 | -- | -- |
| 57.88 | 0.354 | 11.3 | -1.06 | 0.265 | 0.558 | -0.329 | -- | -0.75 | 14.5 | 25.71 | 301 | -- | -- |
| 57.5 | 0.353 | 11.3 | -0.928 | 0.295 | 0.497 | -- | 0.53 | -0.694 | 15.3 | 25.79 | 301 | -- | -- |
| 58.17 | 0.355 | 11.3 | -1.06 | 0.288 | 0.527 | -- | -- | -0.74 | 15.1 | 25.71 | 301 | -- | -- |
| 60.59 | 0.363 | 11.3 | -0.949 | -- | 0.634 | -- | 0.592 | -0.72 | -- | 25.8 | 278 | -- | -- |
| 69.32 | 0.39 | 11.3 | -0.915 | 0.676 | -- | 0.112 | -- | -0.548 | 16.4 | -- | -- | -- | -- |
| 69.35 | 0.39 | 11.3 | -0.914 | 0.677 | -- | -- | -- | -0.548 | 16.3 | -- | -- | -- | -- |
| 61.11 | 0.364 | 11.3 | -1.11 | -- | 0.645 | -- | -- | -0.766 | -- | 25.9 | 247 | -- | -- |
| 86.33 | 0.433 | 11.3 | -- | 0.461 | 0.353 | -- | -- | -0.578 | 15.7 | 25.5 | 256 | -- | -- |
| 93.98 | 0.453 | 11.3 | -0.94 | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
| 91.35 | 0.447 | 11.3 | -- | 0.694 | -- | -- | -- | -0.446 | 16.3 | -- | -- | -- | -- |
| 92.79 | 0.449 | 11.3 | -- | -- | 0.552 | -- | -- | -0.616 | -- | 25.85 | 247 | -- | -- |
| 117.31 | 0.506 | 11.3 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.90 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 2 | 52.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 4 | 52.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 5 | 52.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 15 | 52.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 19 | 52.83 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 19 |
| 27 | 52.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 31 | 53.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 70 | 53.81 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 77 | 53.95 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 80 | 54.04 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 105 | 54.36 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 108 | 54.41 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 168 | 54.85 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 192 | 54.98 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 203 | 55.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 251 | 55.34 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 266 | 55.35 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 284 | 55.44 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 291 | 55.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 309 | 55.57 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 347 | 55.65 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 18 |
| 357 | 55.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 371 | 55.74 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 458 | 56.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 21 |
| 464 | 56.11 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 477 | 56.13 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 502 | 56.22 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 526 | 56.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 562 | 56.37 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 9 | 23 |
| 620 | 56.52 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 637 | 56.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 826 | 56.96 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 16 |
| 845 | 57.00 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 10 |
| 888 | 57.09 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 907 | 57.14 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 919 | 57.16 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 19 |
| 939 | 57.19 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 977 | 57.27 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 990 | 57.29 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 16 |