BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0796500 Os01g0796500|Os01g0796500
         (208 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58830.1  | chr3:21755172-21756637 REVERSE LENGTH=344          207   4e-54

>AT3G58830.1 | chr3:21755172-21756637 REVERSE LENGTH=344
          Length = 343

 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 140/225 (62%), Gaps = 30/225 (13%)

Query: 1   MGAAAWW---RRSLGQRFNPXXXXXXXXXXXSEPRLALPHVSVQDIRWLDWGELRRAGFR 57
           + +  WW   + +LGQR N             + +  LPHVSV+D+R++DW  L+R GF+
Sbjct: 115 ISSNMWWADLKAALGQRINIEGIVSSVSVVVKDRQFVLPHVSVKDLRYIDWEVLKRKGFK 174

Query: 58  GVVFDKDNTLTAPYAPGLWPPLAAAFDQCRAAFPPGSLAVYSNSAD-------------- 103
           GVVFDKDNTLTAPY+  +WPPL  + ++C+A F    +AV+SNSA               
Sbjct: 175 GVVFDKDNTLTAPYSLAIWPPLRPSIERCKAVFG-HDIAVFSNSAGLTEYDHDDSKAKAL 233

Query: 104 ------------IKKPGGEAKEIESYFGCSASNLVLVGDRYFTDVVYGNRNGFLTVLTEP 151
                       +KKP G A+E+E +FGC++S L++VGDR FTD+VYGNRNGFLTVLTEP
Sbjct: 234 EAEIGIRVLRHRVKKPAGTAEEVEKHFGCTSSELIMVGDRPFTDIVYGNRNGFLTVLTEP 293

Query: 152 LNFANESYIVRQVRKFEAYLISYWYRKGHRPIKHPLLPDARRIVK 196
           L+ A E +IVRQVR+ E  L+  W RKG +P+ H L+ D  + VK
Sbjct: 294 LSRAEEPFIVRQVRRLELALLKRWLRKGLKPVDHSLVSDITQFVK 338



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,762,803
Number of extensions: 194895
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)