Os01g0796400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3-hydroxyacyl-CoA dehydrogenase family protein.
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Os01g0796400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3-hydroxyacyl-CoA dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.57 | 0.369 | 10.6 | 1.08 | 0.748 | 0.684 | -0.356 | -0.164 | 0.572 | 1.66 | 23.16 | 1446 | -- | -- |
| 61.63 | 0.366 | 10.6 | 1.05 | 0.745 | 0.681 | -0.351 | -- | 0.564 | 1.67 | 23.16 | 1451 | -- | -- |
| 62.06 | 0.367 | 10.6 | 1.08 | 0.741 | 0.69 | -- | -0.148 | 0.572 | 1.72 | 22.83 | 1451 | -- | -- |
| 62.1 | 0.367 | 10.6 | 1.07 | 0.746 | 0.69 | -- | -- | 0.569 | 1.74 | 22.92 | 1451 | -- | -- |
| 65.2 | 0.376 | 10.7 | 1.01 | -- | 0.833 | -- | -0.614 | 0.441 | -- | 23.61 | 201 | -- | -- |
| 77.87 | 0.414 | 10.7 | 0.945 | 0.72 | -- | -0.507 | -- | 0.387 | 1.6 | -- | -- | -- | -- |
| 78.87 | 0.416 | 10.7 | 0.961 | 0.721 | -- | -- | -- | 0.39 | 1.71 | -- | -- | -- | -- |
| 66.66 | 0.38 | 10.7 | 1.02 | -- | 0.839 | -- | -- | 0.445 | -- | 25.26 | 208 | -- | -- |
| 91.53 | 0.446 | 10.7 | -- | 0.814 | 0.673 | -- | -- | 0.482 | 1.72 | 19.98 | 1451 | -- | -- |
| 110.53 | 0.491 | 10.7 | 0.99 | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
| 103.21 | 0.475 | 10.7 | -- | 0.739 | -- | -- | -- | 0.283 | 1.75 | -- | -- | -- | -- |
| 93.84 | 0.451 | 10.7 | -- | -- | 0.795 | -- | -- | 0.359 | -- | 20 | 212 | -- | -- |
| 136.41 | 0.545 | 10.7 | -- | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.75 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 2 | 57.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 3 | 57.82 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 4 | 57.86 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 7 | 57.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 17 | 58.09 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 31 | 58.22 | humidity | 80 | 14400 | > th | dose dependent | sin | 16 | NA |
| 40 | 58.31 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 44 | 58.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 55 | 58.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 59 | 58.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 74 | 58.45 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 90 | 58.53 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 91 | 58.53 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 95 | 58.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 99 | 58.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 108 | 58.58 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 109 | 58.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 129 | 58.62 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 9 |
| 191 | 58.70 | temperature | 10 | 14400 | > th | dose dependent | sin | 20 | NA |
| 198 | 58.71 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 209 | 58.71 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 226 | 58.72 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 232 | 58.73 | humidity | 80 | 14400 | > th | dose independent | sin | 18 | NA |
| 319 | 58.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 371 | 58.82 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |
| 372 | 58.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 423 | 58.83 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 430 | 58.84 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 432 | 58.84 | temperature | 30 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 455 | 58.85 | temperature | 30 | 14400 | < th | dose dependent | sin | 19 | NA |
| 527 | 58.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 607 | 58.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 768 | 58.95 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 773 | 58.96 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 792 | 58.96 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 800 | 58.97 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 819 | 58.97 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 850 | 58.98 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 885 | 59.00 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 886 | 59.00 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 888 | 59.00 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 934 | 59.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 1000 | 59.03 | temperature | 30 | 14400 | < th | dose dependent | rect. | 12 | 23 |