BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0796400 Os01g0796400|AK103329
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15290.1 | chr3:5145054-5146613 FORWARD LENGTH=295 405 e-113
AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722 141 4e-34
AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726 129 2e-30
>AT3G15290.1 | chr3:5145054-5146613 FORWARD LENGTH=295
Length = 294
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/291 (66%), Positives = 228/291 (78%)
Query: 9 EIAVVGVIGAGQMXXXXXXXXXXXXXXXXXXDSDTAALSRAVDSISSSLRRLVAKGQLSQ 68
E+ VGV+GAGQM D+D ALSRA +ISSS++R V+KG +S+
Sbjct: 3 EMKSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62
Query: 69 ASCEHSIEQIKCVSSVQELRDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128
+ ++ +++ S++++L AD+++EAIVESEDIKKKLF +LD I K SAILASNTSSI
Sbjct: 63 EVGDDAMHRLRLTSNLEDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122
Query: 129 SITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVICS 188
SITRLASAT RP QVIGMHF NPPPIMKL+EIIRGADTSEE F K +ER GKT +CS
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCS 182
Query: 189 QDYPGFIVNRILMPMINEAFWALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCL 248
QDY GF+VNRILMPMINEAF LYTGVATKEDID+GMK GTNHPMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242
Query: 249 SVLRVLHNGLGDSKYSPCPLLVQYVDAGRLGKKRGQGVYSYRTRSSSIKPR 299
SV++VLH GLGDSKY+PCPLLVQYVDAGRLG+KRG GVY YR + + PR
Sbjct: 243 SVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGRKRGVGVYDYREATQKLSPR 293
>AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722
Length = 721
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 8/297 (2%)
Query: 8 REIAVVGVIGAGQMXXXXXXXXXXXXXXXXXXDSDTAALSRAVDSISSSLRRLVAKGQLS 67
R I V VIG G M + ++ L + + S+ ++++ LV++G+L+
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366
Query: 68 QASCEHSIEQIKCVSSVQELRDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSS 127
Q ++ K V E D D+VIEA++E+ +K+ +F E++K+ P ILASNTS+
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426
Query: 128 ISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVIC 187
I + + TN +++G HFF+P +M L+EI+R +TS +V + + + + K +
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486
Query: 188 SQDYPGFIVNRILMPMINEAFWALYTGVATK--EDIDTGMKLGTNHPMGPLQLADFIGLD 245
+ GF VNR P A GV + + T L P+GP QL D G
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGL----PLGPFQLGDLAGHG 542
Query: 246 VCLSVLRVLHNGLGDSKYSPCPLLVQYVDAGRLGKKRGQGVYSYRTRSSSIKPRSSL 302
+ L+V + GD + P+ + +GR GK G+G Y Y + S KP S+
Sbjct: 543 IGLAVGPIYAKVYGDRMFR-SPMTELLLKSGRNGKINGRGYYIYE-KGSKPKPDPSV 597
>AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726
Length = 725
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 10/298 (3%)
Query: 8 REIAVVGVIGAGQMXXXXXXXXXXXXXXXXXXDSDTAALSRAVDSISSSLRRLVAKGQLS 67
R+I V +IG G M + + L + + ++L+ V KG +S
Sbjct: 310 RKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMS 369
Query: 68 QASCEHSIEQIKCVSSVQELRDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSS 127
Q E ++ +K + RD D+VIEA++E+ +K+++F +L+K ILASNTS+
Sbjct: 370 QEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429
Query: 128 ISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVIC 187
I + ++ T +++G HFF+P IM L+EI+R TS +V + +++ KT +
Sbjct: 430 IDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVV 489
Query: 188 SQDYPGFIVNRILMPMINEAFWALYTGVATKEDIDTGM-KLGTNHPMGPLQLADFIGLDV 246
+ GF VNR+ P A + + G A ID + K G PMGP +L D +G V
Sbjct: 490 VGNCTGFAVNRMFFPYTQAAMFLVECG-ADPYLIDRAISKFGM--PMGPFRLCDLVGFGV 546
Query: 247 CLSVLRVLHNGLGDSKYSP--CPLLVQYVDAGRLGKKRGQGVYSYRTRSSSIKPRSSL 302
++ + Y PL+ + AG +K G Y Y + + KP L
Sbjct: 547 AIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRK---GFYLYDDKRKA-KPDPEL 600
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,612,042
Number of extensions: 220329
Number of successful extensions: 576
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)