FiT-DB / Search/ Help/ Sample detail

Os01g0792400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photosystem I assembly protein ycf4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.7 (0.02) R2 : 0.379
β1 : -0.819 (0.0734) R2dD : 0.176 R2D : 0.0058
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.612 (0.0428) R2dN8 : 0.374 R2N8 : 0.203
σ : 0.376
deviance : 64.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.54 0.295 16.7 -0.682 0.486 -0.306 0.435 0.182 -0.457 22.2 25.11 93 -- --
39.7 0.293 16.7 -0.703 0.497 -0.304 0.416 -- -0.462 22.1 25.2 99 -- --
40.25 0.295 16.7 -0.716 0.484 -0.317 -- 0.102 -0.458 22 25.11 95 -- --
40.27 0.296 16.7 -0.744 0.494 -0.311 -- -- -0.474 22 25.3 103 -- --
53.73 0.341 16.6 -0.711 -- -0.36 -- 0.0679 -0.428 -- 25.2 73 -- --
44.7 0.313 16.7 -0.815 0.552 -- 0.475 -- -0.616 23.6 -- -- -- --
45.68 0.317 16.7 -0.834 0.55 -- -- -- -0.618 23.6 -- -- -- --
53.67 0.341 16.6 -0.742 -- -0.353 -- -- -0.442 -- 25.17 66 -- --
54.68 0.344 16.6 -- 0.555 -0.419 -- -- -0.389 21.2 25.4 159 -- --
64.73 0.376 16.7 -0.819 -- -- -- -- -0.612 -- -- -- -- --
64.03 0.374 16.7 -- 0.541 -- -- -- -0.526 23.5 -- -- -- --
66.36 0.379 16.6 -- -- -0.41 -- -- -0.387 -- 25.71 28 -- --
82.41 0.424 16.7 -- -- -- -- -- -0.521 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.51 temperature 25 90 > th dose independent rect. 19 20
4 38.54 temperature 25 270 > th dose independent rect. 17 21
8 38.74 temperature 25 90 > th dose independent rect. 19 23
13 38.84 temperature 25 90 > th dose independent rect. 19 17
25 39.24 temperature 25 90 > th dose independent rect. 24 15
26 39.25 temperature 25 90 > th dose independent rect. 5 22
27 39.26 temperature 25 270 > th dose independent sin 9 NA
38 39.48 temperature 25 90 > th dose independent rect. 19 13
44 39.60 temperature 25 90 > th dose independent rect. 24 23
45 39.63 temperature 25 270 > th dose independent rect. 17 16
47 39.66 temperature 25 90 < th dose independent rect. 16 22
51 39.68 temperature 25 90 > th dose independent rect. 13 23
52 39.68 wind 1 43200 < th dose dependent rect. 21 6
54 39.70 wind 1 43200 < th dose dependent rect. 22 4
59 39.74 temperature 25 90 > th dose independent no NA NA
60 39.75 temperature 25 4320 > th dose independent rect. 17 15
67 39.76 temperature 25 90 > th dose independent rect. 10 23
68 39.76 temperature 25 4320 > th dose dependent rect. 17 14
74 39.79 temperature 25 90 > th dose independent rect. 5 10
79 39.80 temperature 25 4320 > th dose dependent rect. 17 9
90 39.84 temperature 25 90 < th dose independent rect. 23 23
92 39.85 temperature 25 4320 < th dose independent rect. 17 15
94 39.86 wind 1 43200 < th dose dependent sin 15 NA
97 39.87 wind 1 43200 < th dose dependent rect. 14 14
100 39.88 temperature 25 90 < th dose independent rect. 3 23
102 39.88 temperature 20 90 > th dose dependent rect. 19 20
106 39.89 wind 1 43200 < th dose dependent rect. 16 12
107 39.90 temperature 25 4320 > th dose independent rect. 17 9
117 39.93 temperature 25 4320 > th dose independent rect. 17 3
118 39.93 wind 1 43200 < th dose independent rect. 22 4
120 39.93 temperature 25 4320 > th dose independent rect. 19 13
130 39.94 temperature 25 90 < th dose independent rect. 19 23
136 39.96 temperature 25 90 > th dose dependent rect. 19 13
137 39.97 temperature 25 90 < th dose independent no NA NA
139 39.97 temperature 25 4320 < th dose independent rect. 17 9
151 40.00 temperature 25 4320 < th dose independent rect. 17 3
154 40.00 temperature 25 4320 > th dose dependent rect. 17 1
165 40.02 temperature 25 1440 > th dose independent rect. 21 15
167 40.02 temperature 25 90 < th dose independent rect. 19 19
191 40.06 temperature 25 90 < th dose independent rect. 11 23
195 40.07 temperature 25 4320 > th dose independent sin 10 NA
210 40.09 temperature 25 90 < th dose independent rect. 13 23
214 40.10 wind 1 43200 < th dose independent rect. 21 6
217 40.10 temperature 25 4320 > th dose dependent sin 12 NA
239 40.13 humidity 50 43200 < th dose independent rect. 15 2
262 40.15 temperature 25 90 < th dose independent rect. 1 23
283 40.18 temperature 25 1440 < th dose independent rect. 21 15
287 40.19 temperature 25 4320 < th dose independent sin 11 NA
290 40.19 wind 1 43200 < th dose independent rect. 19 8
313 40.22 radiation 10 43200 < th dose dependent rect. 6 2
329 40.25 humidity 50 43200 < th dose independent rect. 15 5
345 40.26 temperature 25 4320 < th dose independent rect. 10 1
346 40.26 atmosphere 1005 43200 < th dose independent rect. 11 1
373 40.28 temperature 25 4320 > th dose independent rect. 10 2
379 40.28 humidity 50 43200 < th dose independent rect. 15 15
383 40.28 temperature 25 90 < th dose independent rect. 9 23
385 40.28 radiation 10 43200 < th dose dependent rect. 1 7
390 40.28 radiation 10 43200 < th dose dependent rect. 21 11
395 40.29 temperature 25 90 < th dose independent sin 6 NA
404 40.29 humidity 50 43200 < th dose independent rect. 15 13
417 40.29 radiation 10 43200 < th dose dependent rect. 17 16
451 40.32 humidity 50 43200 < th dose independent sin 12 NA
487 40.34 temperature 25 4320 > th dose independent rect. 5 3
503 40.35 temperature 25 4320 < th dose independent rect. 5 3
517 40.36 atmosphere 1005 43200 > th dose independent rect. 11 1
518 40.36 radiation 30 43200 < th dose independent rect. 10 1
520 40.36 radiation 40 43200 < th dose independent rect. 12 4
558 40.37 temperature 25 90 < th dose independent rect. 23 15
563 40.37 radiation 20 43200 > th dose independent rect. 15 18
565 40.37 humidity 50 43200 < th dose independent rect. 15 19
579 40.38 atmosphere 1005 43200 < th dose independent rect. 10 3
605 40.38 radiation 20 43200 < th dose dependent sin 11 NA
609 40.38 radiation 1 43200 > th dose dependent rect. 15 18
611 40.39 radiation 40 43200 < th dose independent sin 16 NA
641 40.40 radiation 40 43200 < th dose independent rect. 12 1
648 40.40 radiation 20 43200 < th dose independent rect. 15 20
742 40.42 radiation 20 43200 < th dose independent rect. 15 1
743 40.42 humidity 50 43200 > th dose independent rect. 15 2
803 40.42 radiation 1 43200 > th dose dependent sin 12 NA
811 40.43 radiation 10 43200 < th dose independent rect. 7 1
859 40.44 radiation 30 43200 < th dose independent rect. 7 5
945 40.45 radiation 30 43200 < th dose independent no NA NA
946 40.45 humidity 60 43200 > th dose independent rect. 10 2
971 40.45 radiation 30 43200 < th dose independent rect. 3 14