BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0792400 Os01g0792400|AK062797
         (94 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00520.1  | chrC:59772-60326 FORWARD LENGTH=185                150   1e-37

>ATCG00520.1 | chrC:59772-60326 FORWARD LENGTH=185
          Length = 184

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 83/94 (88%), Gaps = 1/94 (1%)

Query: 1   YDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIRGQGA 60
           YD FDRKEG+V IFRWGFPG  RR+FLRF M+DIQSIRI+VKEG+  RR+LYMEIRGQGA
Sbjct: 92  YDLFDRKEGIVRIFRWGFPGKSRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGA 151

Query: 61  IPLTRTDEKFFTPREIEQKAAELAYFLRIPMEVF 94
           IPL RTDE  FT REIEQKAAELAYFLR+P+EVF
Sbjct: 152 IPLIRTDEN-FTTREIEQKAAELAYFLRVPIEVF 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.334    0.151    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,874,513
Number of extensions: 62922
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 105 (45.1 bits)