Os01g0777700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0777700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.8 | 0.571 | 3.92 | -1.79 | 0.302 | -0.537 | 0.701 | 4.11 | -0.246 | 23.6 | 9.99 | 1452 | -- | -- |
| 173.54 | 0.614 | 3.92 | -1.71 | 0.319 | -0.553 | 0.613 | -- | -0.257 | 23.6 | 9.981 | 4487 | -- | -- |
| 148.64 | 0.568 | 3.88 | -1.69 | 0.367 | -0.638 | -- | 4.28 | -0.165 | 23.6 | 9.996 | 3038 | -- | -- |
| 174.66 | 0.616 | 3.92 | -1.54 | 0.317 | -0.555 | -- | -- | -0.255 | 23.6 | 9.93 | 17477 | -- | -- |
| 154.4 | 0.579 | 3.88 | -1.67 | -- | -0.553 | -- | 4.5 | -0.165 | -- | 9.992 | 2986 | -- | -- |
| 182.81 | 0.634 | 3.94 | -1.75 | 0.251 | -- | 0.808 | -- | -0.155 | 23.3 | -- | -- | -- | -- |
| 185.53 | 0.638 | 3.94 | -1.78 | 0.25 | -- | -- | -- | -0.159 | 24 | -- | -- | -- | -- |
| 174.03 | 0.614 | 3.92 | -1.44 | -- | -0.752 | -- | -- | -0.173 | -- | 9.946 | 22728 | -- | -- |
| 180.57 | 0.626 | 3.96 | -- | 0.254 | -1.62 | -- | -- | 0.177 | 23.4 | 9.955 | 47515 | -- | -- |
| 189.46 | 0.643 | 3.94 | -1.78 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 269.35 | 0.768 | 3.9 | -- | 0.229 | -- | -- | -- | 0.0399 | 23.5 | -- | -- | -- | -- |
| 179.39 | 0.624 | 3.88 | -- | -- | -1.77 | -- | -- | 0.109 | -- | 9.899 | 47520 | -- | -- |
| 272.62 | 0.771 | 3.89 | -- | -- | -- | -- | -- | 0.0417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.38 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 2 | 140.62 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 4 | 140.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 6 | 141.01 | radiation | 40 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 9 | 141.07 | radiation | 40 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 14 | 141.25 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 19 | 142.47 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 20 | 142.48 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 31 | 142.70 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 32 | 142.70 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 16 |
| 36 | 142.71 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 39 | 142.71 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 41 | 142.71 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 67 | 142.99 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 91 | 143.13 | temperature | 15 | 43200 | < th | dose dependent | sin | 2 | NA |
| 102 | 143.21 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 104 | 143.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 120 | 143.37 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 124 | 143.42 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 141 | 143.64 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 163 | 143.70 | radiation | 10 | 1440 | < th | dose independent | sin | 12 | NA |
| 166 | 143.71 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 172 | 143.78 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 185 | 143.84 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 188 | 143.84 | temperature | 15 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 210 | 143.88 | temperature | 15 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 362 | 144.37 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 370 | 144.41 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 378 | 144.47 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 408 | 144.57 | temperature | 15 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 409 | 144.57 | temperature | 15 | 43200 | < th | dose dependent | sin | 17 | NA |
| 427 | 144.64 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 432 | 144.67 | temperature | 15 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 436 | 144.68 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 440 | 144.70 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 442 | 144.71 | temperature | 15 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 461 | 144.82 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 483 | 144.91 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 491 | 144.93 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 501 | 144.97 | temperature | 15 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 507 | 144.99 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 516 | 145.03 | temperature | 15 | 43200 | < th | dose dependent | rect. | 8 | 15 |
| 526 | 145.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 530 | 145.06 | temperature | 15 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 549 | 145.11 | temperature | 15 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 557 | 145.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 609 | 145.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 610 | 145.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 623 | 145.31 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 676 | 145.43 | temperature | 15 | 43200 | < th | dose independent | sin | 23 | NA |
| 726 | 145.55 | radiation | 40 | 4320 | < th | dose independent | sin | 12 | NA |
| 736 | 145.57 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 741 | 145.58 | radiation | 10 | 720 | < th | dose independent | sin | 4 | NA |
| 752 | 145.61 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 888 | 145.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 907 | 145.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 913 | 145.96 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 953 | 146.02 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 957 | 146.03 | temperature | 15 | 43200 | > th | dose independent | sin | 21 | NA |
| 963 | 146.04 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 967 | 146.05 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 1 |