BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0777700 Os01g0777700|J013062N16
         (81 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01310.1  | chr3:94343-101603 REVERSE LENGTH=1057              103   2e-23
AT5G15070.2  | chr5:4876898-4885615 FORWARD LENGTH=1060           102   4e-23

>AT3G01310.1 | chr3:94343-101603 REVERSE LENGTH=1057
          Length = 1056

 Score =  103 bits (256), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 1   GGHFSGIYRKVQLKPSNWVHIPKSNGNGKEEYPIEALMVLKYGGVLTHAGRKQ 53
           GGHFSGIYRKVQLKP  WV IPKS+G+G+EE P+EALMVLKYGGVLTHAGRKQ
Sbjct: 464 GGHFSGIYRKVQLKPLKWVKIPKSDGDGEEERPVEALMVLKYGGVLTHAGRKQ 516



>AT5G15070.2 | chr5:4876898-4885615 FORWARD LENGTH=1060
          Length = 1059

 Score =  102 bits (254), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1   GGHFSGIYRKVQLKPSNWVHIPKSNGNGKEEYPIEALMVLKYGGVLTHAGRKQ 53
           GGHFSGIYRKVQLKP  WV++PKS+G G+EE P+EALMVLKYGGVLTHAGRKQ
Sbjct: 456 GGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVLTHAGRKQ 508



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,056,934
Number of extensions: 76108
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 29
Effective length of database: 9,680,937
Effective search space: 280747173
Effective search space used: 280747173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)