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Os01g0758400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.24 | 0.319 | 11.9 | -0.2 | 1.38 | -0.406 | -0.228 | -0.0698 | -0.247 | 8.59 | 68.09 | 1161 | -- | -- |
| 46.25 | 0.317 | 11.9 | -0.201 | 1.38 | -0.408 | -0.239 | -- | -0.246 | 8.59 | 68 | 1160 | -- | -- |
| 46.4 | 0.317 | 11.9 | -0.197 | 1.38 | -0.405 | -- | -0.134 | -0.243 | 8.59 | 68.28 | 1158 | -- | -- |
| 46.44 | 0.317 | 11.9 | -0.215 | 1.38 | -0.415 | -- | -- | -0.247 | 8.59 | 68.24 | 1160 | -- | -- |
| 116.76 | 0.503 | 11.9 | -0.183 | -- | 0.781 | -- | -0.135 | -0.329 | -- | 80.98 | 622 | -- | -- |
| 52.11 | 0.338 | 11.9 | -0.121 | 1.31 | -- | -0.313 | -- | -0.247 | 8.31 | -- | -- | -- | -- |
| 52.42 | 0.339 | 11.9 | -0.13 | 1.31 | -- | -- | -- | -0.247 | 8.31 | -- | -- | -- | -- |
| 111.65 | 0.492 | 12 | -0.0916 | -- | 0.87 | -- | -- | -0.215 | -- | 79.81 | 630 | -- | -- |
| 47.63 | 0.321 | 11.9 | -- | 1.38 | -0.381 | -- | -- | -0.229 | 8.59 | 68 | 1158 | -- | -- |
| 147.95 | 0.568 | 12 | -0.122 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 52.87 | 0.34 | 11.9 | -- | 1.31 | -- | -- | -- | -0.233 | 8.32 | -- | -- | -- | -- |
| 111.87 | 0.493 | 12 | -- | -- | 0.873 | -- | -- | -0.205 | -- | 79.89 | 631 | -- | -- |
| 148.34 | 0.568 | 12 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.20 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 3 | 46.57 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 4 | 46.93 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 6 | 46.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 23 |
| 7 | 46.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 10 | 47.10 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 11 | 47.12 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 15 | 47.20 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 18 | 47.24 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 19 | 47.25 | wind | 3.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 20 | 47.26 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 21 | 47.27 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 22 | 47.27 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 23 | 47.27 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 26 | 47.27 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 30 | 47.27 | humidity | 80.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 31 | 47.27 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 41 | 47.27 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 42 | 47.27 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 43 | 47.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 64 | 47.27 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 68 | 47.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 73 | 47.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 74 | 47.28 | wind | 5.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 76 | 47.28 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 77 | 47.28 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 78 | 47.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 79 | 47.28 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 84 | 47.29 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 86 | 47.29 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 93 | 47.30 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 101 | 47.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 103 | 47.31 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 104 | 47.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 108 | 47.31 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 110 | 47.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 115 | 47.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 116 | 47.31 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 125 | 47.32 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 126 | 47.32 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 130 | 47.33 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 141 | 47.34 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 150 | 47.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 155 | 47.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 171 | 47.36 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 178 | 47.37 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 179 | 47.37 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 189 | 47.37 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 202 | 47.38 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 222 | 47.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 232 | 47.39 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 240 | 47.39 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 261 | 47.40 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 262 | 47.40 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 276 | 47.40 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 285 | 47.40 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 303 | 47.41 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 340 | 47.43 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 376 | 47.44 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 378 | 47.45 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 450 | 47.48 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 460 | 47.49 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 517 | 47.53 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 522 | 47.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 524 | 47.54 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 526 | 47.54 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 560 | 47.56 | humidity | 70.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 585 | 47.57 | humidity | 70.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 594 | 47.57 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 595 | 47.57 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 624 | 47.58 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 657 | 47.59 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 689 | 47.61 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 10 |
| 706 | 47.62 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 716 | 47.62 | humidity | 70.0 | 30 | > th | dose independent | rect. | 13 | 15 |
| 774 | 47.64 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 851 | 47.67 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 20 |
