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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0748800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PEBP family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0722) R2 : 0.793
β1 : 9.3 (0.366) R2dD : 0.742 R2D : 0.0341
β2 : 1.21 (0.166) R2dC : 0.0243 R2C : -0.117
β3 : 4.25 (0.273) R2dE : 0.176 R2E : 0.188
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.1 (1) R2dD*E : 0.233 R2D*E : -0.765
γ1 : 3.48 (0.162) R2dN8 : 0.395 R2N8 : 0.196
σ : 1.2
deviance : 659.2
__
_____
C
peak time of C : 6.84
E
wheather : radiation
threshold : 1.16
memory length : 14447
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
653.96 1.2 5.73 9.27 1.21 4.23 1.43 13 3.49 6.9 1.157 14445 -- --
938.3 1.43 5.91 9.15 1.87 4.06 1.61 -- 3.41 6.44 6.48 10675 -- --
659.2 1.2 5.73 9.3 1.21 4.25 -- 13.1 3.48 6.84 1.16 14447 -- --
885.82 1.39 6.07 7.94 1.75 3.47 -- -- 3.02 7.26 6.33 11052 -- --
734.97 1.26 5.72 9.3 -- 4.27 -- 13.1 3.52 -- 1.14 14446 -- --
1090.36 1.55 5.92 7.02 1.3 -- 1.7 -- 3.68 6.71 -- -- -- --
1097.65 1.55 5.92 7.05 1.31 -- -- -- 3.67 6.64 -- -- -- --
950.64 1.44 6.07 8.01 -- 2.9 -- -- 3.17 -- 4.79 11577 -- --
1935.64 2.05 6.35 -- 2.01 3.48 -- -- 2.08 6.68 10 2808 -- --
1187 1.61 5.95 7.08 -- -- -- -- 3.7 -- -- -- -- --
2405.86 2.29 6.1 -- 1.4 -- -- -- 2.89 6.34 -- -- -- --
1967.13 2.07 6.35 -- -- 4.87 -- -- 1.84 -- 10 2915 -- --
2507.86 2.34 6.12 -- -- -- -- -- 2.91 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 587.31 temperature 20 43200 < th dose independent rect. 5 1
2 589.35 temperature 20 43200 > th dose independent rect. 5 1
5 591.08 temperature 20 43200 < th dose dependent rect. 4 2
12 593.35 temperature 20 43200 < th dose independent rect. 1 15
25 593.96 temperature 20 43200 > th dose independent rect. 1 15
31 594.09 temperature 20 43200 < th dose independent sin 4 NA
94 594.87 temperature 20 43200 > th dose independent sin 4 NA
96 594.88 temperature 20 43200 < th dose independent rect. 1 6
128 595.13 temperature 20 43200 > th dose independent rect. 1 6
169 595.56 temperature 25 43200 < th dose independent rect. 17 1
242 596.29 temperature 20 43200 > th dose independent rect. 1 2
294 597.07 temperature 25 43200 > th dose independent rect. 17 1
295 597.07 temperature 25 43200 < th dose dependent rect. 18 3
301 597.11 temperature 25 43200 < th dose dependent rect. 19 1
304 597.20 temperature 20 43200 < th dose independent rect. 9 22
346 597.61 temperature 25 43200 < th dose dependent rect. 17 8
348 597.62 temperature 20 43200 < th dose independent rect. 1 23
355 597.67 temperature 25 43200 < th dose dependent rect. 13 14
363 597.73 temperature 20 43200 < th dose independent no NA NA
367 597.76 temperature 20 43200 < th dose independent rect. 14 23
417 598.00 temperature 25 43200 < th dose dependent sin 16 NA
504 598.42 temperature 20 43200 < th dose independent rect. 5 23
521 598.50 temperature 20 43200 > th dose independent rect. 9 22
594 599.00 temperature 20 43200 > th dose independent no NA NA
600 599.05 temperature 20 43200 > th dose independent rect. 14 23
649 599.36 temperature 25 43200 < th dose dependent rect. 23 1
688 599.63 temperature 20 43200 > th dose independent rect. 5 23
702 599.73 temperature 20 43200 > th dose independent rect. 17 14
757 600.15 temperature 20 43200 < th dose independent rect. 23 1
795 600.50 temperature 25 43200 < th dose dependent rect. 13 23
796 600.52 temperature 25 43200 < th dose dependent no NA NA
798 600.52 temperature 25 43200 < th dose dependent rect. 22 23
805 600.57 temperature 25 43200 < th dose dependent rect. 16 23
811 600.59 temperature 25 43200 < th dose dependent rect. 2 23
941 601.42 temperature 15 43200 > th dose dependent rect. 2 1