BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0748800 Os01g0748800|Os01g0748800
(239 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176 159 1e-39
AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176 147 5e-36
AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178 134 4e-32
AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178 124 3e-29
AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176 115 3e-26
AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174 99 2e-21
>AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176
Length = 175
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 118/218 (54%), Gaps = 60/218 (27%)
Query: 8 EPLVLAHVIHDVLDPFRPTMPLRITYNDRLLLAGAELKPSATVHKPRVDIGGTDLRVFYT 67
+PL+++ V+ DVLDPF ++ L++TY R + G +L+PS +KPRV+IGG DLR FYT
Sbjct: 7 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYT 66
Query: 68 LVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSLTCGPV 127
LV+VDPD PSPSNP L EYLH+L
Sbjct: 67 LVMVDPDVPSPSNPHLREYLHWL------------------------------------- 89
Query: 128 GGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVFVLFRQ 187
V DIP TTG F +++ YE P GIHR+VF+LFRQ
Sbjct: 90 -------VTDIPATTGTTF---------------GNEIVCYENPSPTAGIHRVVFILFRQ 127
Query: 188 LGRGTVFAPEMRHNFHCRSFAQQYHLDI-VAATYFNCQ 224
LGR TV+AP R NF+ R FA+ Y+L + VAA ++NCQ
Sbjct: 128 LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQ 165
>AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176
Length = 175
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 113/218 (51%), Gaps = 60/218 (27%)
Query: 8 EPLVLAHVIHDVLDPFRPTMPLRITYNDRLLLAGAELKPSATVHKPRVDIGGTDLRVFYT 67
+PLV+ V+ DVLDPF + L++TY R + G +L+PS ++KP V+IGG D R FYT
Sbjct: 7 DPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYT 66
Query: 68 LVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSLTCGPV 127
LV+VDPD PSPSNP EYLH+L
Sbjct: 67 LVMVDPDVPSPSNPHQREYLHWL------------------------------------- 89
Query: 128 GGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVFVLFRQ 187
V DIP TTG F +++ YE P GIHR+V VLFRQ
Sbjct: 90 -------VTDIPATTGNAF---------------GNEVVCYESPRPPSGIHRIVLVLFRQ 127
Query: 188 LGRGTVFAPEMRHNFHCRSFAQQYHLDI-VAATYFNCQ 224
LGR TV+AP R F+ R FA+ Y+L + VAA+YFNCQ
Sbjct: 128 LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQ 165
>AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178
Length = 177
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 114/221 (51%), Gaps = 62/221 (28%)
Query: 7 VEPLVLAHVIHDVLDPFRPTMPLRITYNDRLLLA-GAELKPSATVHKPRVDIGGTDLRVF 65
+EPL++ VI DVL+ F P++ +R+T+N +++ G EL PS + KPRV+IGG DLR F
Sbjct: 5 IEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSF 64
Query: 66 YTLVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSLTCG 125
+TL+++DPDAPSPSNP + EYLH+
Sbjct: 65 FTLIMMDPDAPSPSNPYMREYLHW------------------------------------ 88
Query: 126 PVGGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVFVLF 185
MV DIPGTT +F ++++ YE P+ GIHR VF LF
Sbjct: 89 --------MVTDIPGTTDASF---------------GREIVRYETPKPVAGIHRYVFALF 125
Query: 186 RQLGRGTV-FAPEMRHNFHCRSFAQQYHLDI-VAATYFNCQ 224
+Q GR V APE R F+ +F+ + L VAA YFN Q
Sbjct: 126 KQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQ 166
>AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178
Length = 177
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 110/225 (48%), Gaps = 63/225 (28%)
Query: 3 GVPTVEPLVLAHVIHDVLDPFRPTMPLRITYNDRLLLAGAELKPSATVHKPRVDIGGTDL 62
G +EPL++ V+ DVLD F PT + ++YN + + G EL PS+ KPRV+I G DL
Sbjct: 5 GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDL 64
Query: 63 RVFYTLVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSL 122
R F+TLV++DPD P PS+P L E+LH++
Sbjct: 65 RSFFTLVMIDPDVPGPSDPFLKEHLHWI-------------------------------- 92
Query: 123 TCGPVGGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVF 182
V +IPGTT F ++++ YE P GIHR VF
Sbjct: 93 ------------VTNIPGTTDATF---------------GKEVVSYELPRPSIGIHRFVF 125
Query: 183 VLFRQLGRGTVFAPEM--RHNFHCRSFAQQYHLDI-VAATYFNCQ 224
VLFRQ R +F P + R +F+ R FA +Y L + VAA +FN Q
Sbjct: 126 VLFRQKQRRVIF-PNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQ 169
>AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176
Length = 175
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 108/220 (49%), Gaps = 62/220 (28%)
Query: 8 EPLVLAHVIHDVLDPFRPTMPLRITYN-DRLLLAGAELKPSATVHKPRVDIGGTDLRVFY 66
+PL++ VI DV+D + + +TYN D+ + G EL PS +KP+V++ G D+R F+
Sbjct: 7 DPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFF 66
Query: 67 TLVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSLTCGP 126
TLV+ DPD P PS+P L E+LH++
Sbjct: 67 TLVMTDPDVPGPSDPYLREHLHWI------------------------------------ 90
Query: 127 VGGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVFVLFR 186
V DIPGTT V+F ++++ YE P GIHR V++LF+
Sbjct: 91 --------VTDIPGTTDVSF---------------GKEIIGYEMPRPNIGIHRFVYLLFK 127
Query: 187 QLGRGTVFA-PEMRHNFHCRSFAQQYHLDI-VAATYFNCQ 224
Q RG+V + P R F+ R FA + L + VAA +FNCQ
Sbjct: 128 QTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQ 167
>AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174
Length = 173
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 101/223 (45%), Gaps = 65/223 (29%)
Query: 6 TVEPLVLAHVIHDVLDPFRPTMPLRITYNDRLLLAGAELKPSATVHKPRVDIGGTDLRVF 65
+V+PLV+ VI DVLD F PT + + + + + G E+KPS V+ P+V+I G
Sbjct: 4 SVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHSDE-L 62
Query: 66 YTLVLVDPDAPSPSNPSLGEYLHYLSGIHRHPEVMVVDIFWVGQSSCDATSHLTWSLTCG 125
YTLV+ DPDAPSPS P++ E++H++
Sbjct: 63 YTLVMTDPDAPSPSEPNMREWVHWI----------------------------------- 87
Query: 126 PVGGGDHMMVIDIPGTTGVNFIPKNNIKDAAINEPKRQDLMLYERPELRYGIHRMVFVLF 185
V+DIPG T N + ++++ Y P GIHR + VLF
Sbjct: 88 ---------VVDIPGGT---------------NPSRGKEILPYMEPRPPVGIHRYILVLF 123
Query: 186 RQ---LGRGTVFAPEMRHNFHCRSFAQQYHLDI-VAATYFNCQ 224
RQ +G V P R NF R FA + L + VA YFN Q
Sbjct: 124 RQNSPVGL-MVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQ 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.141 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,387,388
Number of extensions: 235840
Number of successful extensions: 533
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 12
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)