Os01g0734100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L20.
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Os01g0734100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L20.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.41 | 0.241 | 10.2 | -0.725 | 0.0583 | 0.583 | -0.302 | 1.38 | -0.162 | 12.2 | -1.283 | 106 | -- | -- |
| 28.01 | 0.246 | 10.2 | -0.726 | 0.107 | 0.496 | 0.486 | -- | -0.158 | 11.9 | -9.04 | 126 | -- | -- |
| 26.52 | 0.24 | 10.2 | -0.729 | 0.0865 | 0.554 | -- | 1.06 | -0.161 | 12.5 | 2.021 | 106 | -- | -- |
| 28.89 | 0.25 | 10.2 | -0.709 | 0.119 | 0.481 | -- | -- | -0.159 | 12.4 | 0.5316 | 122 | -- | -- |
| 26.67 | 0.241 | 10.2 | -0.724 | -- | 0.642 | -- | 1.07 | -0.17 | -- | 0.17 | 106 | -- | -- |
| 30.92 | 0.261 | 10.2 | -0.724 | 0.395 | -- | 0.459 | -- | -0.136 | 12.8 | -- | -- | -- | -- |
| 31.81 | 0.264 | 10.2 | -0.707 | 0.394 | -- | -- | -- | -0.134 | 12.9 | -- | -- | -- | -- |
| 29.17 | 0.252 | 10.2 | -0.714 | -- | 0.611 | -- | -- | -0.165 | -- | -0.6359 | 122 | -- | -- |
| 42.25 | 0.303 | 10.2 | -- | 0.121 | 0.496 | -- | -- | -0.0772 | 12.4 | 0.8801 | 114 | -- | -- |
| 41.51 | 0.301 | 10.2 | -0.721 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 44.98 | 0.314 | 10.2 | -- | 0.406 | -- | -- | -- | -0.0548 | 12.9 | -- | -- | -- | -- |
| 42.59 | 0.304 | 10.2 | -- | -- | 0.618 | -- | -- | -0.0874 | -- | -8.112 | 106 | -- | -- |
| 55.23 | 0.347 | 10.2 | -- | -- | -- | -- | -- | -0.0609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 2 | 25.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 3 | 25.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 4 | 25.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 8 | 25.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 14 | 25.29 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 64 | 25.76 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 75 | 25.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 111 | 26.01 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 113 | 26.01 | humidity | 60 | 10 | > th | dose dependent | sin | 0 | NA |
| 127 | 26.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 146 | 26.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 155 | 26.15 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 169 | 26.20 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 203 | 26.26 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 238 | 26.31 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 263 | 26.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 288 | 26.40 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 15 |
| 340 | 26.46 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 342 | 26.46 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 349 | 26.47 | radiation | 40 | 90 | < th | dose dependent | sin | 0 | NA |
| 356 | 26.48 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 369 | 26.50 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 555 | 26.61 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 15 |
| 579 | 26.63 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 590 | 26.64 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 604 | 26.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 13 |
| 613 | 26.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 673 | 26.69 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 728 | 26.73 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 730 | 26.74 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 16 |
| 754 | 26.76 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 10 |
| 765 | 26.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 822 | 26.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 823 | 26.80 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 838 | 26.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 999 | 26.86 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |