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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0732400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0349) R2 : 0.00931
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.152 (0.0734) R2dN8 : 0.012 R2N8 : 0.00931
σ : 0.657
deviance : 197.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.56 0.642 2.84 0.346 0.188 0.405 0.135 1.05 -0.137 23.4 20.75 3675 -- --
186.81 0.637 2.86 0.0997 0.196 0.445 0.16 -- -0.137 23.4 25.99 3961 -- --
186.63 0.636 2.84 0.349 0.188 0.405 -- 1.07 -0.137 23.3 20.8 3696 -- --
186.9 0.637 2.86 0.0923 0.185 0.459 -- -- -0.13 23.1 25.96 3950 -- --
188.75 0.64 2.84 0.332 -- 0.446 -- 1.06 -0.142 -- 21 3743 -- --
192.88 0.651 2.86 0.237 0.234 -- 0.222 -- -0.128 23.6 -- -- -- --
193.09 0.651 2.86 0.228 0.234 -- -- -- -0.128 23.5 -- -- -- --
188.95 0.64 2.86 0.0779 -- 0.506 -- -- -0.134 -- 25.6 3855 -- --
187.1 0.637 2.86 -- 0.184 0.484 -- -- -0.14 23.1 25.9 3948 -- --
196.51 0.655 2.85 0.235 -- -- -- -- -0.126 -- -- -- -- --
194.46 0.652 2.86 -- 0.236 -- -- -- -0.154 23.5 -- -- -- --
189.1 0.64 2.86 -- -- 0.527 -- -- -0.149 -- 25.5 3853 -- --
197.96 0.657 2.86 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.56 temperature 30.0 1440 > th dose dependent rect. 8 1
29 176.30 temperature 30.0 1440 > th dose independent rect. 8 1
57 176.67 wind 1.0 1440 < th dose dependent rect. 6 2
58 177.18 wind 7.0 90 > th dose independent rect. 21 1
60 177.23 precipitation 0.1 90 > th dose independent rect. 21 1
62 177.23 precipitation 0.1 90 > th dose dependent rect. 21 1
64 177.24 wind 7.0 90 > th dose dependent rect. 21 1
66 177.25 wind 7.0 30 > th dose independent rect. 20 7
82 177.27 wind 7.0 30 > th dose dependent rect. 21 5
116 177.42 wind 1.0 30 < th dose independent rect. 11 11
119 177.73 wind 1.0 30 < th dose independent rect. 11 5
121 177.78 temperature 30.0 4320 < th dose independent rect. 21 12
122 177.85 temperature 30.0 4320 < th dose independent rect. 24 9
123 177.86 temperature 30.0 4320 < th dose independent rect. 5 4
150 178.25 wind 1.0 1440 < th dose dependent rect. 6 6
151 178.29 temperature 30.0 4320 < th dose independent rect. 19 14
158 178.43 wind 1.0 1440 < th dose dependent rect. 6 4
176 178.70 wind 1.0 1440 < th dose dependent rect. 6 10
185 178.95 precipitation 0.1 10 > th dose independent rect. 21 5
189 178.95 precipitation 0.1 10 > th dose dependent rect. 21 5
194 179.00 wind 1.0 30 < th dose dependent rect. 11 11
195 179.03 wind 1.0 30 < th dose dependent rect. 14 8
196 179.05 wind 1.0 1440 > th dose independent rect. 6 6
198 179.08 wind 1.0 30 < th dose dependent rect. 11 5
200 179.11 wind 1.0 1440 < th dose independent rect. 6 4
204 179.16 wind 1.0 1440 < th dose independent rect. 6 2
213 179.28 wind 1.0 30 < th dose dependent rect. 14 2
215 179.29 wind 1.0 1440 > th dose independent rect. 6 4
216 179.29 wind 1.0 1440 > th dose independent rect. 6 8
221 179.30 wind 1.0 1440 < th dose independent rect. 6 6
268 179.50 precipitation 0.1 10 > th dose independent rect. 21 1
279 179.50 precipitation 0.1 10 > th dose dependent rect. 21 1
291 179.56 precipitation 0.1 90 > th dose independent rect. 20 7
292 179.56 precipitation 0.1 90 > th dose dependent rect. 20 7
293 179.57 wind 1.0 1440 < th dose independent rect. 6 8
294 179.58 wind 1.0 1440 > th dose independent rect. 5 11
310 179.67 wind 1.0 1440 < th dose dependent rect. 4 12
343 179.98 wind 1.0 1440 < th dose independent rect. 4 12
353 180.04 humidity 90.0 90 > th dose independent rect. 14 1
358 180.04 humidity 90.0 90 > th dose dependent rect. 14 1
383 180.67 wind 3.0 10 > th dose independent rect. 22 1
409 181.10 humidity 90.0 10 > th dose independent rect. 22 1
431 181.43 precipitation 0.1 90 > th dose dependent rect. 18 9
435 181.46 precipitation 0.1 90 > th dose independent rect. 18 9
451 181.59 wind 7.0 30 > th dose independent rect. 18 4
455 181.59 wind 7.0 30 > th dose independent rect. 18 10
479 181.67 humidity 80.0 10 > th dose dependent rect. 22 1
485 181.75 wind 1.0 1440 < th dose dependent sin 1 NA
489 181.81 precipitation 0.1 90 > th dose independent rect. 14 3
491 181.85 wind 1.0 30 > th dose dependent rect. 21 2
510 182.05 wind 1.0 1440 > th dose independent sin 1 NA
551 182.40 wind 7.0 30 > th dose dependent sin 11 NA
552 182.43 atmosphere 1015.0 10 < th dose dependent rect. 22 1
557 182.47 wind 1.0 1440 < th dose independent sin 1 NA
558 182.47 temperature 20.0 30 > th dose independent rect. 21 2
594 182.73 precipitation 0.1 90 > th dose dependent rect. 14 3
595 182.77 temperature 30.0 90 > th dose independent rect. 11 1
596 182.77 radiation 10.0 4320 > th dose independent rect. 17 1
615 182.90 humidity 90.0 90 > th dose independent rect. 20 1
640 183.18 precipitation 0.1 720 > th dose independent rect. 20 1
642 183.18 precipitation 0.1 720 > th dose dependent rect. 20 1
649 183.22 radiation 10.0 43200 < th dose dependent rect. 22 2
704 183.47 precipitation 0.1 90 > th dose independent rect. 14 1
708 183.47 precipitation 0.1 90 > th dose dependent rect. 14 1
761 183.66 temperature 30.0 90 > th dose dependent rect. 10 1
815 183.97 wind 7.0 10 < th dose independent rect. 22 1
817 183.97 temperature 10.0 10 > th dose independent rect. 22 1
819 183.97 temperature 30.0 10 < th dose independent rect. 22 1
820 183.97 humidity 50.0 10 > th dose independent rect. 22 1
823 183.97 atmosphere 995.0 10 > th dose independent rect. 22 1
824 183.97 atmosphere 1010.0 10 < th dose independent rect. 22 1
826 183.97 radiation 1.0 10 < th dose independent rect. 22 1
834 183.97 temperature 10.0 10 > th dose independent rect. 23 23
835 183.97 radiation 1.0 10 < th dose dependent rect. 22 1
860 184.02 radiation 40.0 1440 > th dose independent rect. 15 18
870 184.08 wind 1.0 270 < th dose dependent rect. 12 1
890 184.19 temperature 10.0 10 > th dose dependent rect. 22 1
905 184.30 atmosphere 1005.0 90 < th dose independent rect. 19 3