BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0732400 Os01g0732400|Os01g0732400
         (407 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               61   9e-10

>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 94  MLRTINNSIRTLLIQASMPPSYWAEALATATYLLNRRPSSSIHQSLPFQLLHRTIPDFSH 153
           M RTI   +R++L +  +P ++ A+A  TA +++N+ PS++I+  +P ++  +++P +S+
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 154 LRVFGCLCYPNLSATTPHKLSPRS 177
           LR FGC+ Y +       KL PR+
Sbjct: 61  LRRFGCVAYIHCDEG---KLKPRA 81



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,960,982
Number of extensions: 304833
Number of successful extensions: 853
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,337,553
Effective search space: 2551291218
Effective search space used: 2551291218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)