Os01g0721400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0721400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.21 | 0.463 | 6.37 | 1.31 | 0.803 | 1.21 | 1.55 | -4.55 | 0.32 | 7.17 | 24.7 | 4164 | -- | -- |
| 98.36 | 0.462 | 6.31 | 2.05 | 0.763 | 1.02 | 1.32 | -- | 0.259 | 7.34 | 17.06 | 8271 | -- | -- |
| 103.24 | 0.473 | 6.37 | 1.33 | 0.819 | 1.2 | -- | -4.65 | 0.316 | 6.88 | 24.78 | 4106 | -- | -- |
| 103.97 | 0.475 | 6.3 | 2.13 | 0.809 | 1.04 | -- | -- | 0.273 | 6.72 | 16.47 | 8150 | -- | -- |
| 136.98 | 0.545 | 6.37 | 1.62 | -- | 1.04 | -- | -2.9 | 0.316 | -- | 23.2 | 4260 | -- | -- |
| 120.98 | 0.516 | 6.22 | 2.68 | 0.802 | -- | 1.52 | -- | 0.612 | 6.86 | -- | -- | -- | -- |
| 126.4 | 0.526 | 6.23 | 2.7 | 0.815 | -- | -- | -- | 0.606 | 6.43 | -- | -- | -- | -- |
| 136.56 | 0.544 | 6.32 | 2.13 | -- | 1.04 | -- | -- | 0.26 | -- | 16.74 | 8551 | -- | -- |
| 125.93 | 0.523 | 6.44 | -- | 0.811 | 2.23 | -- | -- | -0.361 | 6.64 | 7.949 | 47520 | -- | -- |
| 160.97 | 0.593 | 6.24 | 2.72 | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
| 318.39 | 0.835 | 6.29 | -- | 0.852 | -- | -- | -- | 0.306 | 6.25 | -- | -- | -- | -- |
| 160.22 | 0.59 | 6.46 | -- | -- | 2.25 | -- | -- | -0.352 | -- | -26.69 | 47520 | -- | -- |
| 356.1 | 0.881 | 6.31 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.98 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 2 | 93.13 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 3 | 93.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 94.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 6 | 94.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 7 | 94.82 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 8 | 94.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 9 | 94.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 17 | 95.12 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 18 | 95.13 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 27 | 95.22 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 29 | 95.25 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 36 | 95.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 41 | 95.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 54 | 95.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 87 | 95.70 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 97 | 95.74 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 99 | 95.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 103 | 95.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 124 | 95.85 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 125 | 95.85 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 127 | 95.86 | wind | 7 | 43200 | > th | dose independent | sin | 19 | NA |
| 129 | 95.86 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 152 | 95.94 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 157 | 95.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 166 | 96.00 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 174 | 96.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 7 |
| 193 | 96.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 194 | 96.10 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 206 | 96.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 231 | 96.18 | wind | 7 | 43200 | > th | dose dependent | sin | 17 | NA |
| 306 | 96.45 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 332 | 96.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 359 | 96.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 449 | 96.72 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 461 | 96.76 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 479 | 96.79 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 670 | 97.08 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 701 | 97.11 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 739 | 97.16 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 757 | 97.17 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 764 | 97.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 767 | 97.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 791 | 97.21 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 868 | 97.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 938 | 97.33 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 960 | 97.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 23 |