BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0721400 Os01g0721400|AK063472
         (507 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14470.1  | chr3:4857940-4861104 FORWARD LENGTH=1055            73   4e-13
AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            56   4e-08

>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
          Length = 1054

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 171/404 (42%), Gaps = 57/404 (14%)

Query: 2   DTFFSAVLGDLLSRSVSFLINRYHQQQKDAEENQQRLHRVLLRIEATVEEADRRCITNQA 61
           + F +A L  L    VS     + ++++  E   +RL   LL I A + +A+ + ITN  
Sbjct: 6   EMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQITNPV 65

Query: 62  MLLQLRMLRDVMYRGYYFLDSFRYR----NIQAHAQD-----------EVGDHSLGLSHF 106
           +   +  LRDV+Y     LD         NI A +              +GD   G S  
Sbjct: 66  VEKWVNELRDVVYHAEDALDDIATEALRLNIGAESSSSNRLRQLRGRMSLGDFLDGNSEH 125

Query: 107 CPLKRFCISTRTWKILSQ--VLEKKELQEMLDHLQGIVSDMQEFVVLMSSYPRMSRQPYG 164
              +   ++ R  ++ SQ  +L  KEL  M+                    P+  R P  
Sbjct: 126 LETRLEKVTIRLERLASQRNILGLKELTAMI--------------------PK-QRLPTT 164

Query: 165 SYLLLENCMFGRQIEKERIINFLLEPHRPAGSKGIDVLPIIGPCRVGKTTLVEHVCHDEM 224
           S L+ E+ +FGR  +K+ I+ FL+  +      GI V+ I+G   VGKTTL + + +D+ 
Sbjct: 165 S-LVDESEVFGRDDDKDEIMRFLIPEN--GKDNGITVVAIVGIGGVGKTTLSQLLYNDQH 221

Query: 225 VRKCF-SKILMYGADSIECGELVP------------LTEIGVIKHR-NPASTGQSLLIIE 270
           VR  F +K+  + ++  +  ++               T++ V++ +     TG  L  + 
Sbjct: 222 VRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLL 281

Query: 271 LVNDMDNETWTRI-LHRLRGDHSTPVGKIIITSRSNKVATF-GTTEALQLDFLPEEEFWY 328
           +++D+ NE +    L R    H+    +I++T+RS +VA+         L  L + + W 
Sbjct: 282 VLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWS 341

Query: 329 FFKTMVFGSANPEEEPELAAICMEIAALMNRSFMGTYIIGDILR 372
            F   VFG+  P    E+  +   I        +    +G +LR
Sbjct: 342 LFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLR 385



>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 158/409 (38%), Gaps = 42/409 (10%)

Query: 13  LSRSVSFLINRYHQQQ--------KDAEENQQRLHRVLLRIEATVEEADRRCITNQAMLL 64
           LS   + ++ R +  Q        K +    +RL   L+     + +AD+R    + +  
Sbjct: 6   LSSCANVMVERINTSQELVELCKGKSSSALLKRLKVALVTANPVLADADQRAEHVREVKH 65

Query: 65  QLRMLRDVMYRGYYFLDSFRYRNIQAHAQDEVGDHSLGLSHFCPLKRFCISTRTWKILSQ 124
            L  ++D  ++    LD  +   ++     E G    GL       R  I  +    + +
Sbjct: 66  WLTGIKDAFFQAEDILDELQTEALRRRVVAEAGGLG-GLFQNLMAGREAIQKKIEPKMEK 124

Query: 125 VLEKKELQEMLDHLQGI----VSDMQEFVVLMSSYPRMSRQPYGSYLLLENCMFGRQIEK 180
           V+  + L+  + H++ I     S+ +E     +S  R    P G        + GR  +K
Sbjct: 125 VV--RLLEHHVKHIEVIGLKEYSETREPQWRQASRSRPDDLPQGR-------LVGRVEDK 175

Query: 181 ERIINFLLEPHRPAGSKGIDVLPIIGPCRVGKTTLVEHVCHDEMVRKCF------SKILM 234
             ++N LL     +  K   V+ ++G   VGKTTL E V +D  V + F      S  + 
Sbjct: 176 LALVNLLLSDDEISIGKPA-VISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKMWISAGIN 234

Query: 235 YGADSIECGELVPLTEIGV---------IKHRNPASTGQSLLIIELVNDMDNETWTRILH 285
           +   ++    L  +T   V         I+ +   S  + LL+++      +  W     
Sbjct: 235 FNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESF-- 292

Query: 286 RLRGDHSTPVGKIIITSRSNKVATFGTTEAL-QLDFLPEEEFWYFFKTMVFGSANPEE-E 343
           ++    +    KI++T+RS  V+T    E + Q+  +  EE W       FG+ +     
Sbjct: 293 QVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNISVGSIN 352

Query: 344 PELAAICMEIAALMNRSFMGTYIIGDILRSNLNPQFWYKFLECFKYYTD 392
            EL  I   IA       +    I   LRS  NP  WY   + F  YT+
Sbjct: 353 QELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYTN 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,000,878
Number of extensions: 459207
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)