Os01g0720800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0720800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.91 | 0.54 | 8.5 | -1.43 | 1.36 | -1.1 | 0.88 | -0.191 | -0.234 | 22.9 | 51 | 1242 | -- | -- |
| 131.93 | 0.535 | 8.5 | -1.42 | 1.37 | -1.14 | 0.88 | -- | -0.236 | 22.9 | 51 | 1230 | -- | -- |
| 135.09 | 0.541 | 8.5 | -1.46 | 1.36 | -1.14 | -- | 0.164 | -0.236 | 22.9 | 50.71 | 1241 | -- | -- |
| 135.1 | 0.541 | 8.5 | -1.47 | 1.35 | -1.1 | -- | -- | -0.235 | 22.9 | 50.76 | 1241 | -- | -- |
| 242.15 | 0.729 | 8.46 | -1.64 | -- | -0.884 | -- | -0.389 | -0.173 | -- | 50.95 | 1322 | -- | -- |
| 146.34 | 0.567 | 8.48 | -1.66 | 1.29 | -- | 0.699 | -- | -0.151 | 22.8 | -- | -- | -- | -- |
| 148.38 | 0.57 | 8.48 | -1.69 | 1.29 | -- | -- | -- | -0.153 | 22.8 | -- | -- | -- | -- |
| 233.98 | 0.712 | 8.49 | -1.51 | -- | -0.974 | -- | -- | -0.268 | -- | 51.03 | 7302 | -- | -- |
| 187.44 | 0.638 | 8.5 | -- | 1.31 | -1.19 | -- | -- | -0.177 | 22.9 | 50 | 4385 | -- | -- |
| 251.07 | 0.74 | 8.45 | -1.66 | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
| 223.31 | 0.699 | 8.44 | -- | 1.28 | -- | -- | -- | 0.0345 | 22.7 | -- | -- | -- | -- |
| 284.51 | 0.786 | 8.5 | -- | -- | -1.18 | -- | -- | -0.0612 | -- | 50.82 | 7298 | -- | -- |
| 323.75 | 0.84 | 8.41 | -- | -- | -- | -- | -- | 0.0387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 2 | 126.86 | humidity | 50 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 3 | 126.89 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 8 | 126.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 46 | 127.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 78 | 127.29 | humidity | 50 | 43200 | < th | dose independent | sin | 21 | NA |
| 100 | 127.34 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 122 | 127.38 | humidity | 50 | 43200 | > th | dose independent | sin | 23 | NA |
| 192 | 127.48 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 274 | 127.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 292 | 127.61 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 302 | 127.62 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 463 | 127.80 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 540 | 127.95 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 582 | 128.20 | wind | 5 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 593 | 128.28 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 597 | 128.30 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 598 | 128.32 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 601 | 128.34 | humidity | 50 | 14400 | < th | dose dependent | sin | 11 | NA |
| 612 | 128.43 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 18 |
| 618 | 128.47 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 628 | 128.59 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 629 | 128.59 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 630 | 128.60 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 636 | 128.67 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 678 | 128.88 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 686 | 128.94 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 14 |
| 692 | 129.04 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 693 | 129.05 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 694 | 129.05 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 697 | 129.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 707 | 129.13 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 9 |
| 715 | 129.19 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 719 | 129.22 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 741 | 129.38 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 742 | 129.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 761 | 129.48 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 764 | 129.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 766 | 129.51 | wind | 5 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 784 | 129.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 785 | 129.59 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 16 |
| 789 | 129.61 | wind | 7 | 4320 | > th | dose dependent | sin | 14 | NA |
| 792 | 129.63 | wind | 7 | 4320 | > th | dose independent | sin | 14 | NA |
| 796 | 129.64 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 803 | 129.67 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 819 | 129.73 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 20 |
| 837 | 129.79 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 841 | 129.82 | wind | 7 | 4320 | < th | dose independent | sin | 14 | NA |
| 842 | 129.82 | humidity | 80 | 43200 | > th | dose independent | sin | 14 | NA |
| 874 | 129.95 | humidity | 50 | 14400 | > th | dose independent | sin | 10 | NA |
| 879 | 129.96 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 884 | 129.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 889 | 130.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 904 | 130.06 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 912 | 130.09 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 913 | 130.10 | humidity | 50 | 14400 | < th | dose independent | sin | 10 | NA |
| 947 | 130.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 966 | 130.23 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 994 | 130.27 | humidity | 80 | 43200 | < th | dose independent | sin | 14 | NA |
| 996 | 130.27 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 21 |