BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0720800 Os01g0720800|Os01g0720800
(582 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425 75 8e-14
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 65 9e-11
AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055 64 3e-10
>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
Length = 1424
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 172 MFGRQMEHEQVLSFLLQTDGLGDEDFPVLPIIGPRKCGKSTLVEHACRDYRVRNHYSLIL 231
+ GR + +++ LL D + V+ ++G GK+TL E DYRV H+ + +
Sbjct: 168 LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKM 227
Query: 232 FLRGN------NLKDARVANLRENGV---------VKHQNYSSCKRLLIIIELACDISEQ 276
++ + A + ++ + V ++ + S KR L++++ S+
Sbjct: 228 WISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDS 287
Query: 277 TWQSLKSSMSCWARGSKIIITSRSDKIENLGTAAAI-RLDLLHPEAYWYFFKKLAFGSRD 335
W+S + + + GSKI++T+RS+ + + A I ++ L+ E W + AFG+
Sbjct: 288 EWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNIS 347
Query: 336 PDE-HPKLASVAMEIATEYSGSFLAAYTIGGLLRDNFNAQFWCSTLKYLRAYIRNQL 391
+ +L + IA + G LAA I LR N W + K +Y + L
Sbjct: 348 VGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYTNSIL 404
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 162/386 (41%), Gaps = 39/386 (10%)
Query: 4 LVPAAVSDIAYRLTTFAIKKYQQLPDAEVALETLNRLLLRAQTIIEEAEGKCIANEGMLH 63
+V A V+ + +K + + D LE L L Q+ +++AE + NE +
Sbjct: 1 MVDAVVTVFLEKTLNILEEKGRTVSDYRKQLEDLQSELKYMQSFLKDAERQKRTNETLRT 60
Query: 64 QLQMLIEGMYRGHYLLDRYKYPALQEDRKDEEVSHVYSFSKFNPAKR-LRFSSHRRTLCF 122
+ L E +Y +L + A +D ++ S+ + S+ +PA+ L++ +R
Sbjct: 61 LVADLRELVYEAEDILVDCQL-ADGDDGNEQRSSNAW-LSRLHPARVPLQYKKSKR---- 114
Query: 123 GSNSIKQLQGMIATIEKGISDMMNLVVFLRNYRVVHHQPRDTYS--VLENC-MFGRQMEH 179
LQ + I K S + F+ V D +S V ++ + G + +
Sbjct: 115 -------LQEINERITKIKSQVEPYFEFITPSNVGRDNGTDRWSSPVYDHTQVVGLEGDK 167
Query: 180 EQVLSFLLQTDGLGDEDFPVLPIIGPRKCGKSTLVEHACRDYRVRNHYSLILFLRGN--- 236
++ +L +++ D ++ +G GK+T+ + D + + + +++ +
Sbjct: 168 RKIKEWLFRSN---DSQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTF 224
Query: 237 -----------NLKDARVANLRENGVVKHQNYSSCKRLLIIIELACDISEQTWQSLKSSM 285
NL DA V + + K Q Y KR LI+++ D + W + +
Sbjct: 225 TEEQIMRSILRNLGDASVGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGL 284
Query: 286 SCWARGSKIIITSRSDKIENLGTA---AAIRLDLLHPEAYWYFFKKLAFGSRDPD-EHPK 341
+G +I+T+RS+ + A R +LL P+ W F +AF + D E P+
Sbjct: 285 PR-GQGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPE 343
Query: 342 LASVAMEIATEYSGSFLAAYTIGGLL 367
L V EI T+ G L +GGLL
Sbjct: 344 LEDVGKEIVTKCKGLPLTIKAVGGLL 369
>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
Length = 1054
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 158/361 (43%), Gaps = 34/361 (9%)
Query: 31 EVALETLNRLLLRAQTIIEEAEGKCIANEGMLHQLQMLIEGMYRGHYLLDRYKYPALQED 90
E LE L+ LL ++ +AE K I N + + L + +Y LD AL+ +
Sbjct: 36 ENLLERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLN 95
Query: 91 RKDEEVSHVYSFSKFNPAKRLRFSSHRRTLC-FGSNSIKQLQGMIATIE---KGISDMMN 146
E S + RLR R +L F + + L+ + + + ++ N
Sbjct: 96 IGAESSS----------SNRLRQLRGRMSLGDFLDGNSEHLETRLEKVTIRLERLASQRN 145
Query: 147 LVVFLRNYRVVHHQPRDTYSVL-ENCMFGRQMEHEQVLSFLLQTDGLGDEDFPVLPIIGP 205
++ ++ Q T S++ E+ +FGR + ++++ FL+ +G D V+ I+G
Sbjct: 146 ILGLKELTAMIPKQRLPTTSLVDESEVFGRDDDKDEIMRFLIPENG-KDNGITVVAIVGI 204
Query: 206 RKCGKSTLVEHACRDYRVRNHYSLILFLRGNNLKD-------------ARVANLRENGVV 252
GK+TL + D VR+++ ++ + D +R + V+
Sbjct: 205 GGVGKTTLSQLLYNDQHVRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVL 264
Query: 253 ----KHQNYSSCKRLLIIIELACDISEQTWQSLKSSMSCWARGSKIIITSRSDKIENLGT 308
K + + L++++ + + W L+ A+GS+I++T+RS ++ ++
Sbjct: 265 QVKLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMC 324
Query: 309 AAAI-RLDLLHPEAYWYFFKKLAFGSRDPDEHPKLASVAMEIATEYSGSFLAAYTIGGLL 367
A + L L W F K FG+++P + ++ +A I + G LA T+GG+L
Sbjct: 325 AVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVL 384
Query: 368 R 368
R
Sbjct: 385 R 385
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,336,171
Number of extensions: 507886
Number of successful extensions: 1179
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 478
Effective length of database: 8,255,305
Effective search space: 3946035790
Effective search space used: 3946035790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)