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Os01g0720600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Starch synthase IVa (Glycogen (Starch) synthase-like).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.02 (0.0284) R2 : 0.00024
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0198 (0.0597) R2dN8 : 0.00031 R2N8 : 0.00024
σ : 0.534
deviance : 131.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.67 0.464 8.99 -0.375 0.503 -0.127 -1.2 5.02 -0.0816 5.65 1004 126 -- --
100.77 0.471 9.02 -0.577 0.511 0.772 -1.28 -- -0.0533 5.51 1002 167 -- --
101.18 0.468 8.99 -0.375 0.493 -0.168 -- 5.36 -0.0871 5.72 1004 128 -- --
104.74 0.48 9.01 -0.583 0.504 0.787 -- -- -0.0477 5.65 1002 135 -- --
113.88 0.497 8.99 -0.336 -- -0.248 -- 5.66 -0.0705 -- 1004 133 -- --
108.12 0.487 9.02 -0.497 0.499 -- -1.3 -- -0.0912 5.56 -- -- -- --
112.28 0.496 9.02 -0.501 0.493 -- -- -- -0.0853 5.73 -- -- -- --
117.87 0.508 9.02 -0.565 -- 0.773 -- -- -0.0385 -- 1002 73 -- --
113.49 0.499 9 -- 0.493 0.66 -- -- 0.00965 5.71 1002 135 -- --
124.87 0.522 9.03 -0.486 -- -- -- -- -0.0737 -- -- -- -- --
118.91 0.51 9.01 -- 0.485 -- -- -- -0.0295 5.77 -- -- -- --
126.07 0.525 9.01 -- -- 0.644 -- -- 0.0173 -- 1002 12 -- --
131.1 0.534 9.02 -- -- -- -- -- -0.0198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.78 atmosphere 1000.0 270 > th dose independent rect. 7 10
5 90.20 atmosphere 1000.0 270 > th dose independent rect. 10 16
9 91.30 atmosphere 1000.0 10 > th dose independent rect. 10 19
10 91.42 atmosphere 1000.0 90 > th dose independent rect. 23 19
11 91.47 atmosphere 1000.0 10 > th dose independent rect. 8 21
15 91.61 wind 1.0 43200 < th dose independent rect. 4 1
17 91.72 atmosphere 1000.0 270 > th dose independent rect. 21 19
18 91.74 wind 1.0 43200 > th dose independent rect. 10 1
20 91.78 wind 1.0 43200 < th dose dependent rect. 13 12
26 91.91 atmosphere 1000.0 10 > th dose independent rect. 8 10
34 92.22 wind 1.0 43200 < th dose independent rect. 10 1
36 92.25 wind 1.0 43200 > th dose independent rect. 17 9
40 92.32 wind 1.0 43200 < th dose independent rect. 16 10
44 92.41 radiation 10.0 14400 > th dose independent rect. 6 1
50 92.57 atmosphere 1000.0 270 > th dose independent rect. 20 21
51 92.61 wind 1.0 43200 < th dose dependent rect. 4 1
72 92.78 wind 1.0 43200 > th dose independent rect. 4 1
75 92.81 wind 1.0 43200 > th dose independent rect. 21 4
79 92.94 atmosphere 1000.0 10 > th dose independent rect. 10 8
80 92.96 radiation 20.0 43200 > th dose independent rect. 13 1
89 93.10 radiation 20.0 14400 < th dose independent rect. 8 1
93 93.13 temperature 10.0 270 > th dose dependent rect. 22 4
94 93.13 wind 1.0 43200 < th dose dependent rect. 19 6
96 93.17 temperature 10.0 270 > th dose dependent rect. 21 6
97 93.18 wind 1.0 43200 > th dose independent rect. 23 2
108 93.29 wind 1.0 43200 < th dose dependent rect. 21 4
111 93.34 wind 1.0 43200 < th dose dependent rect. 10 1
117 93.40 wind 9.0 14400 > th dose dependent rect. 13 1
118 93.40 wind 1.0 43200 < th dose dependent rect. 21 2
119 93.41 humidity 80.0 43200 > th dose independent rect. 20 1
125 93.45 wind 1.0 43200 < th dose dependent rect. 19 4
128 93.47 humidity 80.0 14400 < th dose dependent rect. 19 11
129 93.49 wind 1.0 43200 < th dose independent rect. 21 4
132 93.55 humidity 80.0 14400 < th dose dependent rect. 20 9
133 93.56 humidity 80.0 14400 > th dose independent rect. 20 10
142 93.60 humidity 80.0 14400 < th dose independent rect. 20 10
146 93.64 radiation 20.0 14400 < th dose independent rect. 1 8
152 93.65 radiation 20.0 14400 < th dose independent rect. 3 6
160 93.66 radiation 20.0 14400 < th dose independent rect. 18 15
161 93.66 wind 9.0 270 < th dose independent rect. 3 18
162 93.66 wind 1.0 43200 < th dose dependent sin 17 NA
168 93.70 humidity 80.0 14400 > th dose independent rect. 21 12
173 93.74 humidity 70.0 43200 < th dose independent rect. 12 2
181 93.77 wind 1.0 43200 < th dose independent rect. 23 2
203 93.81 humidity 80.0 270 > th dose independent rect. 21 6
204 93.82 wind 1.0 43200 > th dose independent rect. 21 1
205 93.82 humidity 80.0 43200 > th dose independent rect. 19 3
206 93.82 humidity 80.0 14400 > th dose independent rect. 19 12
210 93.85 wind 1.0 43200 > th dose independent rect. 14 12
211 93.85 radiation 10.0 14400 > th dose dependent rect. 6 1
216 93.88 temperature 15.0 270 > th dose independent rect. 7 10
218 93.89 temperature 20.0 10 > th dose independent rect. 24 5
221 93.91 humidity 80.0 14400 < th dose independent rect. 20 13
241 93.95 radiation 10.0 43200 > th dose independent rect. 17 22
244 93.98 radiation 10.0 43200 > th dose independent rect. 6 9
268 94.05 humidity 80.0 14400 < th dose dependent rect. 3 1
269 94.06 radiation 10.0 43200 > th dose independent sin 4 NA
272 94.06 humidity 50.0 270 > th dose dependent rect. 3 8
308 94.11 humidity 80.0 14400 < th dose dependent rect. 1 3
338 94.17 humidity 80.0 90 > th dose independent rect. 23 6
345 94.18 humidity 80.0 14400 < th dose dependent rect. 1 1
349 94.19 humidity 70.0 43200 < th dose independent rect. 10 7
363 94.19 radiation 40.0 14400 > th dose dependent rect. 12 1
366 94.21 wind 1.0 43200 < th dose independent rect. 21 1
367 94.21 humidity 80.0 43200 < th dose independent rect. 19 2
368 94.21 atmosphere 1000.0 270 > th dose independent rect. 21 6
391 94.25 temperature 20.0 270 > th dose independent rect. 23 3
392 94.25 radiation 10.0 43200 > th dose independent rect. 13 22
441 94.31 radiation 1.0 270 < th dose dependent rect. 4 16
444 94.33 humidity 70.0 43200 > th dose independent rect. 10 4
446 94.33 temperature 10.0 270 > th dose independent rect. 21 6
447 94.33 temperature 30.0 270 < th dose independent rect. 21 6
448 94.33 humidity 70.0 43200 > th dose independent rect. 9 6
449 94.33 humidity 50.0 270 > th dose independent rect. 21 6
453 94.33 radiation 1.0 270 < th dose independent rect. 21 6
460 94.33 temperature 10.0 270 > th dose independent rect. 3 18
462 94.33 radiation 1.0 270 < th dose dependent rect. 21 6
473 94.36 radiation 10.0 43200 > th dose independent no NA NA
474 94.36 wind 9.0 270 < th dose independent rect. 21 6
475 94.36 precipitation 0.1 270 < th dose independent rect. 21 6
557 94.36 precipitation 0.1 270 < th dose dependent rect. 21 6
559 94.37 humidity 50.0 270 > th dose independent rect. 3 18
561 94.37 humidity 50.0 270 > th dose dependent rect. 21 6
571 94.40 radiation 1.0 270 > th dose independent rect. 7 9
574 94.41 humidity 60.0 43200 > th dose independent rect. 12 2
580 94.43 radiation 10.0 43200 > th dose independent rect. 10 23
581 94.43 humidity 80.0 14400 < th dose dependent rect. 23 1
589 94.46 wind 9.0 14400 < th dose independent rect. 13 1
595 94.47 humidity 70.0 43200 > th dose independent rect. 9 8
599 94.47 temperature 15.0 10 > th dose dependent rect. 24 5
604 94.48 radiation 20.0 43200 < th dose dependent rect. 13 2
616 94.51 humidity 80.0 270 > th dose independent rect. 23 2
619 94.51 temperature 30.0 270 < th dose independent rect. 22 17
626 94.53 radiation 10.0 14400 < th dose independent rect. 12 1
637 94.55 atmosphere 1015.0 270 < th dose independent rect. 3 18
638 94.55 wind 1.0 43200 < th dose dependent rect. 23 2
661 94.59 wind 9.0 270 < th dose independent rect. 1 22
662 94.60 wind 1.0 43200 > th dose independent rect. 19 3
690 94.61 radiation 1.0 270 < th dose dependent rect. 3 18
715 94.64 radiation 40.0 43200 > th dose independent rect. 13 1
721 94.65 radiation 1.0 270 < th dose independent rect. 4 16
727 94.66 radiation 1.0 270 < th dose independent rect. 3 18
728 94.66 precipitation 0.1 270 < th dose independent rect. 3 18
731 94.66 precipitation 0.1 270 < th dose dependent rect. 3 18
769 94.68 radiation 20.0 14400 < th dose dependent rect. 6 1
772 94.70 wind 9.0 14400 > th dose independent rect. 13 1
778 94.71 radiation 10.0 43200 < th dose dependent rect. 10 1
784 94.72 wind 1.0 43200 < th dose dependent rect. 6 1
787 94.73 humidity 70.0 43200 < th dose independent rect. 10 1
806 94.76 radiation 10.0 14400 > th dose dependent rect. 8 1
811 94.78 humidity 80.0 43200 < th dose independent rect. 18 4
833 94.82 humidity 70.0 43200 > th dose independent rect. 9 1
869 94.86 humidity 80.0 14400 > th dose independent rect. 3 1
917 94.92 radiation 20.0 43200 < th dose dependent rect. 10 5
923 94.94 radiation 40.0 14400 < th dose independent rect. 13 1
948 94.95 humidity 70.0 43200 < th dose dependent rect. 13 1
950 94.95 radiation 1.0 90 < th dose dependent rect. 23 7
955 94.97 humidity 70.0 43200 < th dose independent sin 0 NA
971 94.99 radiation 1.0 90 < th dose independent rect. 23 6
1000 95.01 wind 9.0 90 < th dose independent rect. 5 18