Os01g0711400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Victorin binding protein.
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Os01g0711400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Victorin binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.5 | 0.411 | 15.4 | 1.22 | 0.887 | -1.22 | 1.66 | 2.73 | 0.452 | 8.21 | 20.19 | 554 | -- | -- |
| 82.88 | 0.424 | 15.4 | 0.735 | 1.19 | -1.05 | 1.31 | -- | 0.292 | 7.83 | 15 | 1871 | -- | -- |
| 82.52 | 0.423 | 15.4 | 1.01 | 0.843 | -1.25 | -- | 1.72 | 0.371 | 8.58 | 22.42 | 485 | -- | -- |
| 84.28 | 0.428 | 15.4 | 0.724 | 0.901 | -1.06 | -- | -- | 0.305 | 8.37 | 22.31 | 507 | -- | -- |
| 107.64 | 0.483 | 15.4 | 1.24 | -- | -1.95 | -- | 3.04 | 0.393 | -- | 24.53 | 566 | -- | -- |
| 101.25 | 0.472 | 15.5 | 0.4 | 1.27 | -- | 1.32 | -- | 0.101 | 7.86 | -- | -- | -- | -- |
| 106.26 | 0.483 | 15.5 | 0.434 | 1.28 | -- | -- | -- | 0.0992 | 7.79 | -- | -- | -- | -- |
| 110.94 | 0.491 | 15.5 | 0.768 | -- | -1.71 | -- | -- | 0.27 | -- | 24.51 | 567 | -- | -- |
| 92.52 | 0.448 | 15.5 | -- | 0.908 | -0.996 | -- | -- | 0.0658 | 8.48 | 26.2 | 460 | -- | -- |
| 194.34 | 0.651 | 15.5 | 0.45 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 111.22 | 0.493 | 15.5 | -- | 1.28 | -- | -- | -- | 0.0509 | 7.76 | -- | -- | -- | -- |
| 125.84 | 0.522 | 15.5 | -- | -- | -1.58 | -- | -- | 0.154 | -- | 24.89 | 557 | -- | -- |
| 199.67 | 0.66 | 15.5 | -- | -- | -- | -- | -- | 0.0673 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 3 | 68.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 13 | 69.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 17 | 70.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 7 |
| 36 | 71.38 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 6 |
| 38 | 71.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 65 | 72.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 93 | 73.23 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 6 |
| 110 | 73.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 176 | 74.97 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 223 | 75.59 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 243 | 75.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 284 | 76.05 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 20 |
| 320 | 76.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 332 | 76.37 | temperature | 20 | 270 | > th | dose dependent | sin | 19 | NA |
| 355 | 76.50 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 370 | 76.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 392 | 76.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 530 | 77.44 | temperature | 10 | 270 | > th | dose dependent | sin | 18 | NA |
| 566 | 77.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 587 | 77.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 596 | 77.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 608 | 77.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 615 | 77.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 659 | 77.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 671 | 77.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 675 | 77.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 716 | 78.08 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 719 | 78.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 780 | 78.24 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 806 | 78.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 820 | 78.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 842 | 78.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 857 | 78.40 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 880 | 78.45 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 948 | 78.54 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 968 | 78.58 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 982 | 78.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |