Os01g0708600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transport protein particle (TRAPP) component, Bet3 family protein.
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Os01g0708600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transport protein particle (TRAPP) component, Bet3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.12 | 0.282 | 11.4 | -1.51 | 0.337 | 0.509 | 0.361 | -1.3 | -0.194 | 3.46 | 18.82 | 2731 | -- | -- |
| 37.57 | 0.285 | 11.4 | -1.39 | 0.331 | 0.921 | 0.272 | -- | -0.166 | 3.37 | 18.46 | 2864 | -- | -- |
| 36.43 | 0.281 | 11.4 | -1.51 | 0.345 | 0.505 | -- | -1.29 | -0.196 | 3.74 | 18.95 | 2812 | -- | -- |
| 37.74 | 0.286 | 11.4 | -1.39 | 0.339 | 0.913 | -- | -- | -0.168 | 3.69 | 18.45 | 2883 | -- | -- |
| 42.91 | 0.305 | 11.4 | -1.53 | -- | 0.543 | -- | -1.26 | -0.196 | -- | 18.8 | 2695 | -- | -- |
| 48.45 | 0.326 | 11.3 | -0.974 | 0.371 | -- | 0.152 | -- | -0.0044 | 3.64 | -- | -- | -- | -- |
| 48.5 | 0.326 | 11.3 | -0.976 | 0.374 | -- | -- | -- | -0.00534 | 3.8 | -- | -- | -- | -- |
| 43.68 | 0.308 | 11.4 | -1.4 | -- | 0.948 | -- | -- | -0.17 | -- | 18.4 | 2664 | -- | -- |
| 56.49 | 0.35 | 11.3 | -- | 0.41 | -0.607 | -- | -- | 0.328 | 3.37 | 22.2 | 47520 | -- | -- |
| 56.22 | 0.35 | 11.3 | -0.961 | -- | -- | -- | -- | 0.00463 | -- | -- | -- | -- | -- |
| 73.61 | 0.401 | 11.3 | -- | 0.355 | -- | -- | -- | 0.103 | 3.83 | -- | -- | -- | -- |
| 63.91 | 0.372 | 11.3 | -- | -- | -0.591 | -- | -- | 0.347 | -- | 26.34 | 47520 | -- | -- |
| 80.55 | 0.419 | 11.3 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.63 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 4 | 35.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 8 | 35.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 10 | 36.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 18 | 36.18 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 26 | 36.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 31 | 36.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 33 | 36.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 39 | 36.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 44 | 36.42 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 19 |
| 49 | 36.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 90 | 36.57 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 129 | 36.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 133 | 36.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 189 | 36.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 191 | 36.85 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 193 | 36.86 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 198 | 36.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 202 | 36.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 223 | 36.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 241 | 36.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 266 | 36.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 12 |
| 352 | 37.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 378 | 37.06 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 379 | 37.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 435 | 37.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 505 | 37.17 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 524 | 37.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 548 | 37.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 583 | 37.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 584 | 37.24 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 585 | 37.24 | radiation | 30 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 597 | 37.25 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 624 | 37.27 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 625 | 37.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 628 | 37.27 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 633 | 37.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 686 | 37.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 711 | 37.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 725 | 37.37 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 742 | 37.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 746 | 37.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 765 | 37.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 779 | 37.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 802 | 37.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 818 | 37.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 872 | 37.48 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 889 | 37.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 916 | 37.52 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 942 | 37.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 943 | 37.54 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 947 | 37.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 968 | 37.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 992 | 37.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 998 | 37.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |