BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0708600 Os01g0708600|AK111377
         (194 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58030.1  | chr5:23487021-23488483 REVERSE LENGTH=196          375   e-105

>AT5G58030.1 | chr5:23487021-23488483 REVERSE LENGTH=196
          Length = 195

 Score =  375 bits (964), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/193 (92%), Positives = 190/193 (98%)

Query: 1   MIGVGKAKQYANVLDKPLSRGRQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK KQY+NVLDKPLS+G+QEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVG+RVLELLC+REKGNRRETRLLGILSF+HSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISVPKDMGAFNCGAFVAGIVRGVLENAGFPAVVTAHFVPIEGQQRPRTTILI 180
           KELLVNRFIS+PKDMG FNCGAFVAGIV+GVL+NAGFPAVVTAHFVPIEGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query: 181 KFAEEVLQREARF 193
           KFA+EVL+REAR 
Sbjct: 181 KFADEVLKREARL 193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,929,715
Number of extensions: 157454
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)