Os01g0687400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chitinase (EC 3.2.1.14).
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Os01g0687400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chitinase (EC 3.2.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.6 | 0.696 | 10.1 | -2.35 | 1.11 | 3.33 | -0.604 | 10.5 | -0.614 | 5.87 | 6.903 | 14388 | -- | -- |
| 296.04 | 0.801 | 9.63 | -1.7 | 1.39 | 1.95 | 0.652 | -- | -0.334 | 5.57 | 6.236 | 4920 | -- | -- |
| 219.29 | 0.69 | 10.1 | -2.28 | 1.1 | 3.34 | -- | 10.5 | -0.617 | 6 | 7 | 14374 | -- | -- |
| 285.05 | 0.786 | 9.69 | -1.91 | 1.36 | 1.78 | -- | -- | -0.525 | 5.85 | 7.2 | 5026 | -- | -- |
| 281.35 | 0.781 | 10.1 | -2.21 | -- | 3.2 | -- | 9.83 | -0.585 | -- | 7.3 | 14333 | -- | -- |
| 323.19 | 0.843 | 9.67 | -2.82 | 1.11 | -- | -0.706 | -- | -0.395 | 5.83 | -- | -- | -- | -- |
| 324.33 | 0.843 | 9.67 | -2.83 | 1.11 | -- | -- | -- | -0.392 | 5.96 | -- | -- | -- | -- |
| 343.11 | 0.863 | 9.69 | -2.07 | -- | 1.69 | -- | -- | -0.46 | -- | 6.3 | 5662 | -- | -- |
| 372.13 | 0.898 | 9.74 | -- | 1.02 | 2.43 | -- | -- | -0.604 | 5.82 | 7.001 | 5760 | -- | -- |
| 387.76 | 0.92 | 9.68 | -2.8 | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
| 535.25 | 1.08 | 9.6 | -- | 1.06 | -- | -- | -- | -0.0768 | 6.09 | -- | -- | -- | -- |
| 429.61 | 0.965 | 9.71 | -- | -- | 2.66 | -- | -- | -0.478 | -- | 6.292 | 5662 | -- | -- |
| 593.99 | 1.14 | 9.61 | -- | -- | -- | -- | -- | -0.0563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.41 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 2 | 213.51 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 4 | 213.73 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 5 | 214.14 | wind | 9 | 14400 | < th | dose independent | sin | 15 | NA |
| 6 | 214.17 | wind | 7 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 13 | 214.74 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 16 | 214.83 | wind | 9 | 14400 | > th | dose independent | sin | 15 | NA |
| 19 | 214.85 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 39 | 215.56 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 49 | 215.79 | wind | 7 | 14400 | > th | dose dependent | no | NA | NA |
| 50 | 215.83 | wind | 7 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 52 | 215.91 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 62 | 216.05 | wind | 7 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 85 | 216.75 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 111 | 217.39 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 123 | 217.71 | wind | 9 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 128 | 217.79 | wind | 9 | 14400 | > th | dose dependent | sin | 15 | NA |
| 133 | 217.85 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 135 | 217.87 | wind | 7 | 14400 | > th | dose dependent | sin | 17 | NA |
| 150 | 218.16 | wind | 7 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 151 | 218.18 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 179 | 218.56 | wind | 7 | 14400 | > th | dose independent | no | NA | NA |
| 188 | 218.64 | wind | 7 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 191 | 218.69 | wind | 7 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 200 | 218.78 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 201 | 218.82 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 215 | 218.91 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 294 | 219.68 | wind | 7 | 14400 | < th | dose independent | no | NA | NA |
| 297 | 219.72 | wind | 7 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 298 | 219.73 | wind | 7 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 333 | 219.99 | wind | 7 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 484 | 221.69 | wind | 7 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 637 | 223.67 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 709 | 224.37 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 795 | 225.15 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 9 |