BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0687400 Os01g0687400|AK106178
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            263   7e-71

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 142/278 (51%), Positives = 180/278 (64%), Gaps = 8/278 (2%)

Query: 28  GKVAVYWGQGAGNGDGTLAETCATGLYDFVNIAFLNVYGSGLTPVLNLAAHCNPDAGTCK 87
           G +A+YWGQ  GN +G L+ TCATG Y +VN+AFL  +G+G TP LNLA HCNP A TC 
Sbjct: 30  GGIAIYWGQN-GN-EGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCT 87

Query: 88  XXXXXXXXXXXXGVKVLLSLGGERGQYSLSSADDARGVADYLWNTFLGGSSDSRPLGDAV 147
                       G+KV+LSLGG  G YS+ S +DA+ +ADYLWN FLGG S SRPLGDAV
Sbjct: 88  HFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAV 147

Query: 148 LDGIDFDIEKDG-DHYDELAMALS--SKCNGACVLTAAPQCPYPDAHLDAAIKTGVFSHV 204
           LDGIDF+IE     H+D+LA  LS  S       LT APQCP+PD  + +A+ T  F +V
Sbjct: 148 LDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRFDYV 207

Query: 205 WVQFYNNRQCQYASGDASALQAAWAQWTSGVPAPADVFLGLPTAPAAAPSGGYIDADTLL 264
           W+QFYNN  C Y+SG+   L  +W +WT+ + A    FLGLP AP AA S GYI  D L 
Sbjct: 208 WIQFYNNPPCSYSSGNTQNLFDSWNKWTTSI-AAQKFFLGLPAAPEAAGS-GYIPPDVLT 265

Query: 265 SQVLPAVEGAAANYGGVMLWNRWRDVTAGYGAKLKGKV 302
           SQ+LP ++  +  YGGVMLW+++ D   GY + +   V
Sbjct: 266 SQILPTLK-KSRKYGGVMLWSKFWDDKNGYSSSILASV 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,530,305
Number of extensions: 270857
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)