Os01g0683400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Origin recognition complex 4.
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Os01g0683400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Origin recognition complex 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.93 | 0.335 | 6.6 | -0.143 | 1.61 | 0.825 | 0.611 | 0.323 | -0.274 | 20.4 | 19.7 | 270 | -- | -- |
| 51.21 | 0.333 | 6.59 | -0.11 | 1.61 | 0.767 | 0.568 | -- | -0.268 | 20.4 | 19.7 | 269 | -- | -- |
| 52.06 | 0.336 | 6.6 | -0.152 | 1.61 | 0.853 | -- | 0.344 | -0.277 | 20.4 | 19.45 | 269 | -- | -- |
| 52.23 | 0.337 | 6.59 | -0.132 | 1.6 | 0.755 | -- | -- | -0.271 | 20.4 | 19.7 | 270 | -- | -- |
| 182.38 | 0.632 | 6.55 | -0.151 | -- | 0.877 | -- | 0.134 | -0.289 | -- | 19.14 | 93 | -- | -- |
| 65.9 | 0.381 | 6.62 | -0.369 | 1.57 | -- | 0.389 | -- | -0.391 | 20.6 | -- | -- | -- | -- |
| 66.39 | 0.382 | 6.62 | -0.382 | 1.57 | -- | -- | -- | -0.391 | 20.6 | -- | -- | -- | -- |
| 176.01 | 0.621 | 6.53 | -0.205 | -- | 0.673 | -- | -- | -0.213 | -- | 22.1 | 34 | -- | -- |
| 52.64 | 0.338 | 6.58 | -- | 1.61 | 0.793 | -- | -- | -0.25 | 20.4 | 19.7 | 270 | -- | -- |
| 205.86 | 0.67 | 6.57 | -0.386 | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
| 70.23 | 0.392 | 6.61 | -- | 1.57 | -- | -- | -- | -0.349 | 20.6 | -- | -- | -- | -- |
| 177.09 | 0.622 | 6.52 | -- | -- | 0.694 | -- | -- | -0.185 | -- | 22.1 | 34 | -- | -- |
| 209.79 | 0.676 | 6.56 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.07 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 4 | 47.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 11 | 49.06 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 12 | 49.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 13 | 49.43 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 14 |
| 22 | 49.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 25 | 49.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 35 | 50.04 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 36 | 50.05 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 13 |
| 47 | 50.19 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 19 |
| 51 | 50.23 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 71 | 50.51 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 109 | 50.90 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 144 | 51.21 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 180 | 51.41 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 21 |
| 184 | 51.42 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 187 | 51.44 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 191 | 51.45 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 220 | 51.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 228 | 51.55 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 272 | 51.74 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 283 | 51.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 340 | 52.05 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 20 |
| 358 | 52.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 368 | 52.15 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 384 | 52.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 406 | 52.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 493 | 52.64 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 522 | 52.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 594 | 52.90 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 11 |
| 626 | 52.94 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 631 | 52.96 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 696 | 53.07 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 776 | 53.18 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 897 | 53.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 898 | 53.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 909 | 53.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 977 | 53.66 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 9 |