BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0683400 Os01g0683400|AK102997
         (470 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01120.2  | chr2:85444-88027 FORWARD LENGTH=425                490   e-139

>AT2G01120.2 | chr2:85444-88027 FORWARD LENGTH=425
          Length = 424

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/455 (54%), Positives = 328/455 (72%), Gaps = 52/455 (11%)

Query: 18  LRGRLCDQAVVHSALRSSPDTNYSKLKYLVASSVSEACNNSVLLLGPRGCGKAAVRFSFL 77
           +RGRLCD + V   L +S D+NYSKLK++V++S++E CNNS+LLLGPRG GKAAV     
Sbjct: 14  IRGRLCDPSYVFRPLSASSDSNYSKLKFIVSTSITEGCNNSMLLLGPRGSGKAAV----- 68

Query: 78  VYSSAPLSAVFSDAGVVFDEMCQWAIYDFTLWVVSAWTEXXXXXXXXXXXXHPDAISVIR 137
                    +    G + ++                                PD++SVIR
Sbjct: 69  ---------LDLXXGXLLEQF-------------------------------PDSVSVIR 88

Query: 138 LNGMLHSDDNCATKEIARQLCLEHQLSFSKMASSDDNTEFMIDMLRECGLAHKTIIFVLE 197
           LNG+LHSDDNCA KEIA+QLC+EH L FSKMAS DDN++F+I MLR CGLAHKTIIFVL+
Sbjct: 89  LNGLLHSDDNCAFKEIAKQLCMEHHLLFSKMASFDDNSQFIIAMLRACGLAHKTIIFVLD 148

Query: 198 EFDLFAQGKQRLLYSLLD-AMQSLTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFVP 256
           EFD+FAQGKQRLLYS LD AMQS+TSQAVV+G+S RLDADQLLEKRVRSRFSHRK LF+P
Sbjct: 149 EFDMFAQGKQRLLYSXLDDAMQSVTSQAVVVGISSRLDADQLLEKRVRSRFSHRKFLFLP 208

Query: 257 SSVDSLQRLMEHLLALPEDSPLPTKYVREYNARITSIFNDKKFKGILSSLTDADATTSHI 316
            S + L  L  HLL+LP DS  P+ YV  +N +I ++ +D +FK IL +L +A++T +  
Sbjct: 209 PSREELDGLFVHLLSLPADSGFPSGYVSRFNDKIKNLTSDTRFKDILKTLFNANSTVNSF 268

Query: 317 LRFL------FRVVSYMDIDSGLLSMQSFMNALSSMQRQPKMDSLQDLSILELYILVCMN 370
           L+F+      F  VS M+++SGLLS+++F  ALSSMQRQPK+++++D S+LELY+LVCM 
Sbjct: 269 LKFILSLDVRFCAVSLMNLESGLLSLENFKAALSSMQRQPKLEAVRDCSVLELYLLVCMR 328

Query: 371 RLEDKEKSSYNFITIMKEYKSVQDAYKTSDKYSHTVCFRAFEHLLDRELISFADNKGRNQ 430
           RLE KE+SSYNFI++MKEYK++ D++ TSD Y+  VC RAFEHL +R++I +A+N+G++Q
Sbjct: 329 RLEVKEQSSYNFISVMKEYKAIHDSFHTSDYYAQNVCLRAFEHLRERQVICYAENRGQSQ 388

Query: 431 ALEYRPVKLLISSRELAESLKLNTTCPAVLQKLLD 465
             EYR  KLLIS+ EL + ++ +  CPA+L KLLD
Sbjct: 389 TGEYRLQKLLISASELHQGMRSHACCPAILLKLLD 423



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,910,112
Number of extensions: 350854
Number of successful extensions: 982
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 2
Length of query: 470
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 368
Effective length of database: 8,310,137
Effective search space: 3058130416
Effective search space used: 3058130416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)