Os01g0682200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GPI transamidase component GAA1.
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Os01g0682200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GPI transamidase component GAA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.04 | 0.262 | 9.03 | 1.11 | 0.255 | 1.69 | -0.676 | 3.13 | 0.401 | 1.6 | 0.8699 | 1453 | -- | -- |
| 35.8 | 0.279 | 9.03 | 1.36 | 0.135 | 1.26 | 0.623 | -- | 0.389 | 13.1 | 1.855 | 1611 | -- | -- |
| 32.27 | 0.265 | 9.03 | 1.12 | 0.348 | 1.64 | -- | 3 | 0.405 | 1.28 | 0.8493 | 1428 | -- | -- |
| 36.37 | 0.281 | 8.97 | 1.42 | 0.33 | 1.45 | -- | -- | 0.473 | 14.3 | 2.111 | 1670 | -- | -- |
| 35.23 | 0.276 | 9.02 | 1.2 | -- | 1.84 | -- | 3.03 | 0.424 | -- | 0.83 | 1487 | -- | -- |
| 47.33 | 0.323 | 9.01 | 1.17 | 0.288 | -- | -0.705 | -- | 0.313 | 1.3 | -- | -- | -- | -- |
| 49.33 | 0.329 | 9.01 | 1.2 | 0.288 | -- | -- | -- | 0.317 | 0.98 | -- | -- | -- | -- |
| 36.42 | 0.281 | 8.97 | 1.41 | -- | 1.23 | -- | -- | 0.476 | -- | 1.894 | 1543 | -- | -- |
| 81.6 | 0.421 | 9.01 | -- | 0.109 | 0.756 | -- | -- | 0.264 | 15.1 | 10 | 1747 | -- | -- |
| 54.5 | 0.345 | 9.01 | 1.21 | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
| 87.2 | 0.437 | 9.04 | -- | 0.308 | -- | -- | -- | 0.183 | 1.14 | -- | -- | -- | -- |
| 81.4 | 0.42 | 9.01 | -- | -- | 0.709 | -- | -- | 0.281 | -- | 10 | 1677 | -- | -- |
| 93.09 | 0.45 | 9.04 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 39 | 30.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 41 | 30.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 46 | 30.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 51 | 30.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 55 | 30.86 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 72 | 30.93 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 96 | 31.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 121 | 31.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 135 | 31.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 162 | 31.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 164 | 31.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 166 | 31.22 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 168 | 31.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 172 | 31.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 185 | 31.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 199 | 31.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 209 | 31.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 211 | 31.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 302 | 31.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 324 | 31.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 384 | 31.61 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 427 | 31.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 432 | 31.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 436 | 31.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 445 | 31.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 517 | 32.03 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 549 | 32.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 550 | 32.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 552 | 32.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 566 | 32.25 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 567 | 32.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 574 | 32.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 617 | 32.33 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 625 | 32.36 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 628 | 32.36 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 641 | 32.38 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 645 | 32.39 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 647 | 32.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 648 | 32.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 662 | 32.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 697 | 32.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 706 | 32.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 720 | 32.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 726 | 32.64 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 728 | 32.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 739 | 32.67 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 740 | 32.67 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 741 | 32.67 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 748 | 32.69 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 749 | 32.69 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 757 | 32.71 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 766 | 32.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 780 | 32.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 792 | 32.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 799 | 32.79 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 801 | 32.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 814 | 32.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 826 | 32.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 833 | 32.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 836 | 32.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 845 | 32.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 855 | 32.86 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 859 | 32.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 860 | 32.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 863 | 32.87 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 865 | 32.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 873 | 32.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 886 | 32.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 904 | 32.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 912 | 32.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 917 | 32.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 919 | 32.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 926 | 32.89 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 942 | 32.90 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 945 | 32.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |