BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0682200 Os01g0682200|J033139J23
         (297 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19130.1  | chr5:6416128-6418993 REVERSE LENGTH=700            218   3e-57

>AT5G19130.1 | chr5:6416128-6418993 REVERSE LENGTH=700
          Length = 699

 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 175/289 (60%), Gaps = 17/289 (5%)

Query: 6   RLTEGVVRSVNNLLEKFHQSFFLYFLTAPSKFISVGVYMIPFXXXXXXXXXXXXXXXGGS 65
           RL EG +RSVNNLLEKFHQSFFLY LT+PSKFISVGVYMI F                  
Sbjct: 419 RLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASL---- 474

Query: 66  KTKGKLEDECKTKGNADDLQMEG-GSWKWLKSARVLLIIQFWAVLVSLLPYYISQIPGAM 124
                  D CK+  N+     E   SWKWL +A+ +  +     +V+LLPY+I Q+PG  
Sbjct: 475 -----YIDGCKSLTNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQH 529

Query: 125 -PIQYAVIWAVLSITILIILY-AMFG-SP--SR-AGVEWKLLKATMITSITIGMGLMSII 178
            P   +++W   S ++L+I +  M G SP  SR  G  W +LK+  I++  IG+ LMSII
Sbjct: 530 SPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSII 589

Query: 179 NFATAQLGALILIPMCLFSRPLRAQLEMNFLPRTVLLASNILLTVLGFPPAAFLIMK-GL 237
           NFATA++GAL+L+P CL ++P++  L    L   +    +I+L  +GFP   F I K  L
Sbjct: 590 NFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLL 649

Query: 238 SKGSWTVDIVGDFWLWMEFLWEWSSATYLYVFLVHLPCWLLCIHVLLHP 286
            +G   + + G+FW W+E LW W SATYLY+ +VHLPCWLLC+ +L HP
Sbjct: 650 GEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHP 698



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.141    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,051,673
Number of extensions: 227662
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)